Factsheet for Bra017662.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45317	Canola	cytosol	97.22	98.59
Bra011543.1-P	Field mustard	cytosol	91.47	92.38
AT4G34570.1	Thale cress	mitochondrion	86.11	76.81
KRH60811	Soybean	nucleus	76.59	72.83
KRH29421	Soybean	cytosol	75.4	71.97
KRH24440	Soybean	cytosol, nucleus	75.4	71.7
PGSC0003DMT400001937	Potato	cytosol	74.8	71.54
Solyc01g109830.2.1	Tomato	cytosol	74.4	71.16
VIT_18s0001g12940.t01	Wine grape	cytosol	70.63	70.92
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	72.62	70.25
Os12t0446900-01	Rice	cytosol	72.42	70.06
Zm00001d007318_P001	Maize	cytosol	72.22	69.6
KRH51504	Soybean	nucleus	75.6	67.08
Bra013079.1-P	Field mustard	cytosol	79.56	64.89
Zm00001d050448_P001	Maize	cytosol	35.91	63.51
KXG28376	Sorghum	mitochondrion, plastid	73.02	63.23
Zm00001d030396_P001	Maize	cytosol	35.71	63.16
Zm00001d049188_P008	Maize	mitochondrion	72.62	62.89
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	71.63	62.67
TraesCS2D01G520000.1	Wheat	plastid	71.63	62.67
TraesCS2B01G547000.1	Wheat	plastid	71.63	62.56
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	10.52	60.92
HORVU2Hr1G114640.8	Barley	cytosol, plastid	71.63	59.57
VIT_03s0038g04500.t01	Wine grape	golgi	74.4	59.52
GSMUA_Achr2P14300_001	Banana	cytosol	58.73	58.61
Bra000581.1-P	Field mustard	cytosol	51.98	57.96
Os11t0615250-00	Rice	cytosol	8.53	38.74

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10
Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	EnsemblPlantsGene:Bra017662	EnsemblPlants:Bra017662.1	EnsemblPlants:Bra017662.1-P
InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004146	GO:GO:0004799	GO:GO:0006139	GO:GO:0006231	GO:GO:0006545	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009165	GO:GO:0009987
GO:GO:0016491	GO:GO:0016740	GO:GO:0032259	GO:GO:0046654	GO:GO:0055114	InterPro:IPR001796
InterPro:IPR024072	InterPro:IPR036926	UniProt:M4DMC9	HAMAP:MF_00008	PFAM:PF00186	PFAM:PF00303
PIRSF:PIRSF000389	PRINTS:PR00108	ScanProsite:PS00075	ScanProsite:PS00091	PFscan:PS51330	PANTHER:PTHR11548
PANTHER:PTHR11548:SF7	SUPFAM:SSF53597	SUPFAM:SSF55831	TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf
InterPro:Thymidylate_synthase	InterPro:Thymidylate_synthase_AS	UniParc:UPI000254127E	SEG:seg	:	:

Description

AT2G16370 (E=2e-245) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase

Coordinates

chrA03:-:29580937..29583418

Molecular Weight (calculated)

56595.0 Da

IEP (calculated)

6.827

GRAVY (calculated)

-0.198

Length

504 amino acids

Sequence
(BLAST)

001: MATTLNEPQR ASYQVVVAAT KEMGIGKDGK LPWTLPTDLK FFKDLTLTTS DSTTKKNAVV MGRRTWESIP AKHRPLSGRL NVVLTRSSGF EIANAENVVT
101: CRSLDSALEL LAGPPYSLSI EKVFVIGGGE VLRDSLNGAR CEAIHLTEID TCIECDTFVP AVDASAYQPW CSSLPMCENG VRFAFTTYVR VKSDESKEAL
201: QVDWKKFSSL LPKKVFERHE EFLYLNLVDE IISSGNLKND RTGTGTVSKF GCQMTFNLRR SFPLLTTKRV FWRGVVEELL WFISGSTNAK LLQEKGIHIW
301: DGNASREYLD GIGLTEREEG DLGPVYGFQW RHFGAKYTDM HADYTGQGFD QLLDVVNKIK NNPDDRRIIM SAWNPSDLKL MALPPCHMFA QFYVANGELS
401: CQMYQRSADM GLGVPFNIAS YSLLTCILAH VCYLVPGDFI HVIGDAHVYK NHVRPLQEQL ENPPKPFPVL KINPEKKHID SFVAADFELI GYDPHKKIDM
501: KVAV

Best Arabidopsis Sequence Match ( AT4G34570.4 )
(BLAST)

001: MRCLQNSAKT LPLAFKSVSI STMANTLNGN VIMTSKPQST YQVVVAATKE MGIGKDGKLP WNLPTDLKFF KDLTLSTSDS AKKNAVVMGR KTWESIPKKY
101: RPLSGRLNVV LSRSSGFDIA NTENVVTCSS IDSALDLLAA PPFSLSIEKV FVIGGGDILR EALNKPSCEA IHITEIDTSI DCDTFIPTVD TSAYQPWCSS
201: FPICENGLRF SFTTHVRVKS SSAGEASDES DGSKVLQVDW KKFSSVLPKM IFDRHEEYLY LNLVKEIISN GNLKDDRTGT GTLSKFGCQM KFNLRRNFPL
301: LTTKRVFWRG VVEELLWFIS GSTNAKVLQE KGIRIWDGNA SRAYLDGIGL TEREEGDLGP VYGFQWRHFG AKYTDMHADY TGQGFDQLLD VINKIKNNPD
401: DRRIIMSAWN PSDLKLMALP PCHMFAQFYV ANGELSCQMY QRSADMGLGV PFNIASYSLL TCILAHVCDL VPGDFIHVIG DAHVYKNHVR PLQEQLENPP
501: KPFPVLKINP EKKDIDSFVA DDFELIGYDP HKKIDMKMAV

Arabidopsis Description

THY-2Bifunctional dihydrofolate reductase-thymidylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q05763]
SUBAcon: [mitochondrion,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.