Factsheet for VIT_18s0075g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g12940.t01	Wine grape	cytosol	73.56	12.75
KRH60811	Soybean	nucleus	74.71	12.26
Solyc01g109830.2.1	Tomato	cytosol	70.11	11.57
PGSC0003DMT400001937	Potato	cytosol	70.11	11.57
KRH24440	Soybean	cytosol, nucleus	70.11	11.51
VIT_03s0038g04500.t01	Wine grape	golgi	81.61	11.27
KRH51504	Soybean	nucleus	73.56	11.27
CDX83194	Canola	cytosol	55.17	11.21
KRH29421	Soybean	cytosol	67.82	11.17
Bra011543.1-P	Field mustard	cytosol	62.07	10.82
CDX89705	Canola	cytosol	63.22	10.7
Bra000581.1-P	Field mustard	cytosol	55.17	10.62
AT2G16370.1	Thale cress	cytosol	63.22	10.6
Bra017662.1-P	Field mustard	cytosol	60.92	10.52
CDY45317	Canola	cytosol	59.77	10.46
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	56.32	9.96
CDX69070	Canola	mitochondrion, plastid	60.92	9.64
AT4G34570.1	Thale cress	mitochondrion	60.92	9.38
CDX75443	Canola	mitochondrion	60.92	9.31
CDY02264	Canola	cytosol	63.22	8.9
Bra013079.1-P	Field mustard	cytosol	63.22	8.9
CDX72487	Canola	cytosol	1.15	0.53
CDY21464	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.40.430.10	MapMan:6.3.1.2
MapMan:7.5.5	ProteinID:CCB44965	ProteinID:CCB44965.1	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_dom
UniProt:F6GYC9	EMBL:FN594970	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004146	GO:GO:0004799	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006545
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009165
GO:GO:0009987	GO:GO:0015074	GO:GO:0016740	GO:GO:0032259	GO:GO:0046654	GO:GO:0050661
GO:GO:0055114	InterPro:IPR001796	InterPro:IPR024072	PFAM:PF00186	PFscan:PS51330	PANTHER:PTHR11548
PANTHER:PTHR11548:SF7	SUPFAM:SSF53597	UniParc:UPI0002108C6E	ArrayExpress:VIT_18s0075g01010	EnsemblPlantsGene:VIT_18s0075g01010	EnsemblPlants:VIT_18s0075g01010.t01

Description

No Description!

Coordinates

chr18:+:22846423..22847409

Molecular Weight (calculated)

9642.8 Da

IEP (calculated)

8.241

GRAVY (calculated)

0.164

Length

87 amino acids

Sequence
(BLAST)

1: MGRKTWESIP LEHWPLRNRL NVILTRPRSF DIATAENVVI CRSMAAALEL LATSPYCLSI EKVFVIGSGQ ILKEGLDAPG RDAIHIA

Best Arabidopsis Sequence Match ( AT2G16370.2 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQVMPL YLLILLFLLQ

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.