Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89705 | Canola | cytosol | 86.71 | 87.55 |
| AT4G34570.1 | Thale cress | mitochondrion | 85.93 | 78.94 |
| PGSC0003DMT400001937 | Potato | cytosol | 75.72 | 74.57 |
| Solyc01g109830.2.1 | Tomato | cytosol | 75.34 | 74.19 |
| KRH60811 | Soybean | nucleus | 75.34 | 73.77 |
| KRH29421 | Soybean | cytosol | 74.95 | 73.67 |
| KRH24440 | Soybean | cytosol, nucleus | 74.95 | 73.4 |
| VIT_18s0001g12940.t01 | Wine grape | cytosol | 70.91 | 73.31 |
| Os12t0446900-01 | Rice | cytosol | 73.41 | 73.13 |
| Bra013079.1-P | Field mustard | cytosol | 86.51 | 72.65 |
| Os11t0484400-01 | Rice | cytosol, plasma membrane, plastid | 72.83 | 72.55 |
| CDY02264 | Canola | cytosol | 86.13 | 72.33 |
| Zm00001d007318_P001 | Maize | cytosol | 72.83 | 72.28 |
| KRH51504 | Soybean | nucleus | 74.57 | 68.13 |
| Zm00001d030396_P001 | Maize | cytosol | 36.61 | 66.67 |
| Zm00001d050448_P001 | Maize | cytosol | 36.42 | 66.32 |
| KXG28376 | Sorghum | mitochondrion, plastid | 73.8 | 65.81 |
| Zm00001d049188_P008 | Maize | mitochondrion | 73.41 | 65.46 |
| TraesCS2B01G547000.1 | Wheat | plastid | 72.25 | 64.99 |
| TraesCS2A01G518600.1 | Wheat | mitochondrion, plastid | 72.06 | 64.93 |
| TraesCS2D01G520000.1 | Wheat | plastid | 71.87 | 64.76 |
| VIT_18s0075g01010.t01 | Wine grape | cytosol, mitochondrion | 10.6 | 63.22 |
| VIT_03s0038g04500.t01 | Wine grape | golgi | 76.69 | 63.17 |
| GSMUA_Achr2P14300_001 | Banana | cytosol | 59.73 | 61.39 |
| HORVU2Hr1G114640.8 | Barley | cytosol, plastid | 71.29 | 61.06 |
| AT2G21550.1 | Thale cress | cytosol, plasma membrane, plastid | 52.79 | 55.69 |
| Os11t0615250-00 | Rice | cytosol | 8.86 | 41.44 |
Protein Annotations
| KEGG:00240+2.1.1.45 | KEGG:00670+1.5.1.3 | KEGG:00670+1.5.1.3+2.1.1.45 | KEGG:00670+2.1.1.45 | KEGG:00790+1.5.1.3 | Gene3D:3.30.572.10 |
| Gene3D:3.40.430.10 | MapMan:6.3.1.2 | MapMan:7.5.5 | EntrezGene:816134 | ProteinID:AAD22302.1 | ProteinID:AEC06489.1 |
| ProteinID:ANM62435.1 | ArrayExpress:AT2G16370 | EnsemblPlantsGene:AT2G16370 | RefSeq:AT2G16370 | TAIR:AT2G16370 | RefSeq:AT2G16370-TAIR-G |
| EnsemblPlants:AT2G16370.1 | TAIR:AT2G16370.1 | EMBL:AY063968 | EMBL:AY114032 | InterPro:DHFR-TS | InterPro:DHFR-like_dom_sf |
| InterPro:DHFR_CS | InterPro:DHFR_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004146 | GO:GO:0004799 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006231 | GO:GO:0006545 | GO:GO:0006730 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 |
| GO:GO:0009058 | GO:GO:0009165 | GO:GO:0009257 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0016740 |
| GO:GO:0032259 | GO:GO:0046654 | GO:GO:0055114 | InterPro:IPR001796 | InterPro:IPR024072 | InterPro:IPR036926 |
| EMBL:L08593 | HAMAP:MF_00008 | RefSeq:NP_001324593.1 | RefSeq:NP_179230.1 | PFAM:PF00186 | PFAM:PF00303 |
| PIRSF:PIRSF000389 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00108 |
| ScanProsite:PS00075 | ScanProsite:PS00091 | PFscan:PS51330 | PANTHER:PTHR11548 | PANTHER:PTHR11548:SF7 | UniProt:Q05762 |
| SUPFAM:SSF53597 | SUPFAM:SSF55831 | Symbol:THY-1 | TIGRFAMs:TIGR03284 | InterPro:Thymidate_synth/dCMP_Mease | InterPro:Thymidate_synth/dCMP_Mease_sf |
| InterPro:Thymidylate_synthase | InterPro:Thymidylate_synthase_AS | UniParc:UPI00000017CC | SEG:seg | : | : |
Description
THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
Coordinates
chr2:-:7081763..7084865
Molecular Weight (calculated)
58146.6 Da
IEP (calculated)
5.650
GRAVY (calculated)
-0.200
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.