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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • cytosol 3
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os11t0484400-01 Rice cytosol, plasma membrane, plastid 81.38 81.38
CDX72487 Canola cytosol 28.21 78.61
TraesCS2A01G518600.1 Wheat mitochondrion, plastid 84.64 76.56
TraesCS2B01G547000.1 Wheat plastid 84.64 76.43
TraesCS2D01G520000.1 Wheat plastid 84.45 76.39
CDX89705 Canola cytosol 73.7 74.71
Bra011543.1-P Field mustard cytosol 71.21 74.35
KRH60811 Soybean nucleus 75.43 74.15
KRH29421 Soybean cytosol 75.05 74.05
VIT_18s0001g12940.t01 Wine grape cytosol 71.21 73.9
AT2G16370.1 Thale cress cytosol 73.13 73.41
KRH24440 Soybean cytosol, nucleus 74.47 73.21
Solyc01g109830.2.1 Tomato cytosol 73.9 73.06
PGSC0003DMT400001937 Potato cytosol 73.32 72.49
Bra017662.1-P Field mustard cytosol 70.06 72.42
CDY45317 Canola cytosol 68.71 72.03
HORVU2Hr1G114640.8 Barley cytosol, plastid 82.92 71.29
KRH51504 Soybean nucleus 75.43 69.19
CDX69070 Canola mitochondrion, plastid 72.17 68.36
AT4G34570.1 Thale cress mitochondrion 71.78 66.19
CDX75443 Canola mitochondrion 71.59 65.55
GSMUA_Achr2P14300_001 Banana cytosol 62.38 64.36
CDY02264 Canola cytosol 71.98 60.68
Bra013079.1-P Field mustard cytosol 71.98 60.68
CDX83194 Canola cytosol 46.26 56.31
Bra000581.1-P Field mustard cytosol 48.37 55.75
AT2G21550.1 Thale cress cytosol, plasma membrane, plastid 52.59 55.69
CDY21464 Canola cytosol 29.75 50.99
Os11t0615250-00 Rice cytosol 9.02 42.34
Protein Annotations
KEGG:00240+2.1.1.45KEGG:00670+1.5.1.3KEGG:00670+1.5.1.3+2.1.1.45KEGG:00670+2.1.1.45KEGG:00790+1.5.1.3Gene3D:3.30.572.10
Gene3D:3.40.430.10MapMan:6.3.1.2MapMan:7.5.5EntrezGene:9271078UniProt:B9GCZ3ProteinID:BAT17009.1
InterPro:DHFR-TSInterPro:DHFR-like_dom_sfInterPro:DHFR_CSInterPro:DHFR_domProteinID:EEE53150.1GO:GO:0003674
GO:GO:0003824GO:GO:0004146GO:GO:0004799GO:GO:0005575GO:GO:0006139GO:GO:0006231
GO:GO:0006730GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0009058GO:GO:0009165
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016491GO:GO:0016740GO:GO:0032259
GO:GO:0046654GO:GO:0055114InterPro:IPR001796InterPro:IPR024072InterPro:IPR036926HAMAP:MF_00008
EnsemblPlantsGene:Os12g0446900EnsemblPlants:Os12t0446900-01PFAM:PF00186PFAM:PF00303PIRSF:PIRSF000389PRINTS:PR00108
ScanProsite:PS00075ScanProsite:PS00091PFscan:PS51330PANTHER:PTHR11548PANTHER:PTHR11548:SF7SUPFAM:SSF53597
SUPFAM:SSF55831TIGRFAMs:TIGR03284InterPro:Thymidate_synth/dCMP_MeaseInterPro:Thymidate_synth/dCMP_Mease_sfInterPro:Thymidylate_synthaseInterPro:Thymidylate_synthase_AS
UniParc:UPI0001935832RefSeq:XP_015618899.1RefSeq:XP_015618900.1RefSeq:XP_015618901.1::
Description
Similar to bifunctional dihydrofolate reductase-thymidylate synthase. (Os12t0446900-01)
Coordinates
chr12:+:15130136..15140357
Molecular Weight (calculated)
58933.8 Da
IEP (calculated)
7.557
GRAVY (calculated)
-0.269
Length
521 amino acids
Sequence
(BLAST)
001: MSTNVNNGNS ESNLKRSYQV VVSATRDMGI GKDGTLPWKL PGDLKFFKDI TVTTSDPSKK NAVVMGRKTW ESIPLKFRPL PGRLNVILTR SGSFDFATAE
101: NVVICGSLDS ALQLLATTPY CLTVEKTFII GGGEILRQSL NAPACEAIHL TDIESSIECD TFIPPIDLSM FHPWYSSFPV VENGIKHSFI SFVRVTKSIA
201: EANDSSGKEL TGNDSKKVKF EIENFSFLPK MIFERHEEYQ YLNLVQDIIR NGAKKNDRTG TGTVSKFGCQ MRFNLRRNFP LLTTKRVFWR GVLEELLWFI
301: SGSTNAKVLQ EKGIHIWDGN ASRQYLDSIG LTQREEGDLG PVYGFQWRHF GAEYTDMHAD YVGKGFDQLM DVIDKIKNNP DDRRIILSAW NPTDLKKMAL
401: PPCHMFAQFY VENGELSCQM YQRSADMGLG VPFNIASYSL LTCMIAQVCD LSPGDFVHVI GDAHVYRTHV EALEEQMRKQ PKPFPILKIN PVKKDIDSFV
501: TSDFKLVRYD PHHKIEMKMA V
Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)
001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV
Arabidopsis Description
THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.