CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24440	Soybean	cytosol, nucleus	95.08	94.72
CDX72487	Canola	cytosol	30.87	87.17
KRH60811	Soybean	nucleus	82.2	81.89
PGSC0003DMT400001937	Potato	cytosol	77.65	77.8
Bra011543.1-P	Field mustard	cytosol	73.11	77.35
Solyc01g109830.2.1	Tomato	cytosol	76.89	77.04
CDX89705	Canola	cytosol	74.43	76.46
KRH51504	Soybean	nucleus	82.2	76.41
CDY45317	Canola	cytosol	71.21	75.65
Bra017662.1-P	Field mustard	cytosol	71.97	75.4
Os12t0446900-01	Rice	cytosol	74.05	75.05
AT2G16370.1	Thale cress	cytosol	73.67	74.95
Zm00001d007318_P001	Maize	cytosol	73.86	74.57
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	73.11	74.09
CDX69070	Canola	mitochondrion, plastid	73.3	70.36
AT4G34570.1	Thale cress	mitochondrion	73.86	69.03
CDX75443	Canola	mitochondrion	73.3	68.01
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	11.17	67.82
KXG28376	Sorghum	mitochondrion, plastid	74.62	67.7
Zm00001d049188_P008	Maize	mitochondrion	74.62	67.7
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	71.97	65.97
Zm00001d030396_P001	Maize	cytosol	35.61	65.96
TraesCS2D01G520000.1	Wheat	plastid	71.78	65.8
TraesCS2B01G547000.1	Wheat	plastid	71.78	65.68
Zm00001d050448_P001	Maize	cytosol	35.42	65.61
GSMUA_Achr2P14300_001	Banana	cytosol	60.42	63.17
HORVU2Hr1G114640.8	Barley	cytosol, plastid	71.59	62.38
CDY02264	Canola	cytosol	72.54	61.97
Bra013079.1-P	Field mustard	cytosol	72.54	61.97
CDX83194	Canola	cytosol	46.97	57.94
Bra000581.1-P	Field mustard	cytosol	49.43	57.74
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	52.84	56.71
CDY21464	Canola	cytosol	31.06	53.95
Os11t0615250-00	Rice	cytosol	8.52	40.54

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	EntrezGene:100786311
Gene3D:3.30.572.10	Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	UniProt:A0A0R0HFN7	EMBL:ACUP02006800
InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_dom	EnsemblPlantsGene:GLYMA_11G115200	GO:GO:0003674	GO:GO:0003824
GO:GO:0004146	GO:GO:0004799	GO:GO:0005575	GO:GO:0006139	GO:GO:0006231	GO:GO:0006545
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009165
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016740	GO:GO:0032259
GO:GO:0046654	GO:GO:0055114	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926	EnsemblPlants:KRH29421
ProteinID:KRH29421	ProteinID:KRH29421.1	HAMAP:MF_00008	PFAM:PF00186	PFAM:PF00303	PIRSF:PIRSF000389
PRINTS:PR00108	ScanProsite:PS00091	PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	MetaCyc:PWY-3841
MetaCyc:PWY-6614	MetaCyc:PWY-7184	MetaCyc:PWY-7187	MetaCyc:PWY-7198	MetaCyc:PWY-7199	MetaCyc:PWY-7210
SUPFAM:SSF53597	SUPFAM:SSF55831	TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase
InterPro:Thymidylate_synthase_AS	UniParc:UPI000233CCB6	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:8810773..8815870

Molecular Weight (calculated)

59638.2 Da

IEP (calculated)

6.329

GRAVY (calculated)

-0.291

Length

528 amino acids

Sequence
(BLAST)

001: MASDSLVISN GNGNSKSEPH PQRTYQAVVV ATRDMGISKD EKLPWTLPTD LNFFEEITTT TSDPGKKNAV VMGRKTWESI PPENRPLPGR LNVVLTRSGS
101: FDIATAENVL ICGSVSSAME LLASSPYCLS IEKVFLTGGG EIFREALNAP GCEAAHITEI EASIECDTFM PRVNTSVFQT WYSSFPLVED NLRYSFTTYV
201: RVRSFPPESP DQNADPFFDN NSDALKFEVK KFSFLPKMVY ERHEEFKYLR LVQEIISEGT TKDDRTGTGT LSKFGCQMRF NLRRNFPLLT TKKVFWRGVI
301: EELLWFISGS TSAKVLQEKG IHIWDGNASR EYLDSIGLTD REEGDLGPVY GFQWRHFGAK YTDMHADYSG QGFDQLLDVI NKIKHNPDDR RIILSAWNPS
401: DLKLMALPPC HMFAQFYVAN GELSCQMYQR SADMGLGVPF NIASYALLTC MIAHVCDLVP GDFIHVIGDA HVYRNHVRPL QEQLQNQPKP FPILKINPKK
501: KDIDSFVASD FKLIGYVPHQ KIEMKMAV

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.