CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017662.1-P	Field mustard	cytosol	98.59	97.22
CDX72487	Canola	cytosol	35.81	95.19
CDX69070	Canola	mitochondrion, plastid	90.74	82.0
CDX75443	Canola	mitochondrion	91.95	80.32
CDX89705	Canola	cytosol	81.69	78.99
AT4G34570.1	Thale cress	mitochondrion	86.12	75.75
KRH60811	Soybean	nucleus	77.06	72.26
KRH29421	Soybean	cytosol	75.65	71.21
KRH24440	Soybean	cytosol, nucleus	75.45	70.75
VIT_18s0001g12940.t01	Wine grape	cytosol	71.43	70.72
PGSC0003DMT400001937	Potato	cytosol	74.45	70.21
Solyc01g109830.2.1	Tomato	cytosol	74.04	69.83
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	72.64	69.29
Os12t0446900-01	Rice	cytosol	72.03	68.71
Zm00001d007318_P001	Maize	cytosol	72.23	68.64
KRH51504	Soybean	nucleus	75.65	66.2
CDY02264	Canola	cytosol	79.48	63.92
Zm00001d050448_P001	Maize	cytosol	36.42	63.51
Zm00001d030396_P001	Maize	cytosol	36.22	63.16
KXG28376	Sorghum	mitochondrion, plastid	72.64	62.03
Zm00001d049188_P008	Maize	mitochondrion	72.43	61.86
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	71.23	61.46
TraesCS2D01G520000.1	Wheat	plastid	71.23	61.46
TraesCS2B01G547000.1	Wheat	plastid	71.23	61.35
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	10.46	59.77
HORVU2Hr1G114640.8	Barley	cytosol, plastid	71.23	58.42
VIT_03s0038g04500.t01	Wine grape	golgi	74.04	58.41
GSMUA_Achr2P14300_001	Banana	cytosol	58.15	57.23
CDX83194	Canola	cytosol	48.69	56.54
CDY21464	Canola	cytosol	32.6	53.29
Os11t0615250-00	Rice	cytosol	8.65	38.74

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10
Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	GO:A0A078I5G1	UniProt:A0A078I5G1	EnsemblPlants:CDY45317
ProteinID:CDY45317	ProteinID:CDY45317.1	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0006139	GO:GO:0006231
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058
GO:GO:0009165	GO:GO:0009987	GO:GO:0016491	GO:GO:0016740	GO:GO:0032259	GO:GO:0046654
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00081771001	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926	HAMAP:MF_00008
PFAM:PF00186	PFAM:PF00303	PIRSF:PIRSF000389	PRINTS:PR00108	ScanProsite:PS00075	ScanProsite:PS00091
PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	MetaCyc:PWY-3841	MetaCyc:PWY-6614	MetaCyc:PWY-7184
MetaCyc:PWY-7187	MetaCyc:PWY-7198	MetaCyc:PWY-7199	MetaCyc:PWY-7210	SUPFAM:SSF53597	SUPFAM:SSF55831
TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase	InterPro:Thymidylate_synthase_AS	UniPathway:UPA00077
UniPathway:UPA00575	UniParc:UPI0004EDC288	SEG:seg	:	:	:

Description

BnaA03g52900DBifunctional dihydrofolate reductase-thymidylate synthase [Source:UniProtKB/TrEMBL;Acc:A0A078I5G1]

Coordinates

chrLK032620:-:90617..93230

Molecular Weight (calculated)

55972.2 Da

IEP (calculated)

6.640

GRAVY (calculated)

-0.224

Length

497 amino acids

Sequence
(BLAST)

001: MATTLNEPQR ASYQEMGIGK DGKLPWTLPT DLKFFKDLTL TTSDSTTKKN AVVMGRRTWE SIPAKYKPLS GRLNVVLTRS SGFEIANAEN VVTCRSLDSA
101: LELLAGPPYS LSIEKVFVIG GGEVLRDSLN GSRCEAIHLT EIDTCIECDT FVPAVDASAY QPWCSSLPMC ENGVRFCFTT YVRVKSDDSK EALQVDWKKF
201: SSLLPKKVFE RHEEFLYLNL VDEIISSGNL KNDRTGTGTL SKFGCQMTFN LRRSFPLLTT KRVFWRGVVE ELLWFISGST NAKLLQEKGI HIWDGNASRE
301: YLDGIGLTER EEGDLGPVYG FQWRHFGAKY TDMHADYTGQ GFDQLLDVVN KIKNNPDDRR IIMSAWNPSD LKLMALPPCH MFAQFYVANG ELSCQMYQRS
401: ADMGLGVPFN IASYSLLTCI LAHVCYLVPG DFIHVIGDAH VYKNHVRPLQ EQLENPPKPF PVLKINPEKK HIDSFVAADF ELIGYDPHKK IDMKVAV

Best Arabidopsis Sequence Match ( AT4G34570.4 )
(BLAST)

001: MRCLQNSAKT LPLAFKSVSI STMANTLNGN VIMTSKPQST YQVVVAATKE MGIGKDGKLP WNLPTDLKFF KDLTLSTSDS AKKNAVVMGR KTWESIPKKY
101: RPLSGRLNVV LSRSSGFDIA NTENVVTCSS IDSALDLLAA PPFSLSIEKV FVIGGGDILR EALNKPSCEA IHITEIDTSI DCDTFIPTVD TSAYQPWCSS
201: FPICENGLRF SFTTHVRVKS SSAGEASDES DGSKVLQVDW KKFSSVLPKM IFDRHEEYLY LNLVKEIISN GNLKDDRTGT GTLSKFGCQM KFNLRRNFPL
301: LTTKRVFWRG VVEELLWFIS GSTNAKVLQE KGIRIWDGNA SRAYLDGIGL TEREEGDLGP VYGFQWRHFG AKYTDMHADY TGQGFDQLLD VINKIKNNPD
401: DRRIIMSAWN PSDLKLMALP PCHMFAQFYV ANGELSCQMY QRSADMGLGV PFNIASYSLL TCILAHVCDL VPGDFIHVIG DAHVYKNHVR PLQEQLENPP
501: KPFPVLKINP EKKDIDSFVA DDFELIGYDP HKKIDMKMAV

Arabidopsis Description

THY-2Bifunctional dihydrofolate reductase-thymidylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q05763]
SUBAcon: [mitochondrion,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.