Factsheet for VIT_03s0038g04500.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
golgi 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72487	Canola	cytosol	24.76	83.42
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	11.27	81.61
VIT_18s0001g12940.t01	Wine grape	cytosol	63.17	79.28
PGSC0003DMT400001937	Potato	cytosol	66.03	78.94
Solyc01g109830.2.1	Tomato	cytosol	65.71	78.56
AT2G16370.1	Thale cress	cytosol	63.17	76.69
CDX89705	Canola	cytosol	62.22	76.26
Bra011543.1-P	Field mustard	cytosol	60.32	76.15
Bra017662.1-P	Field mustard	cytosol	59.52	74.4
CDY45317	Canola	cytosol	58.41	74.04
AT4G34570.1	Thale cress	mitochondrion	62.38	69.56
CDX69070	Canola	mitochondrion, plastid	60.63	69.45
CDX75443	Canola	mitochondrion	60.63	67.14
Bra013079.1-P	Field mustard	cytosol	61.27	62.46
CDY02264	Canola	cytosol	61.11	62.3
Bra000581.1-P	Field mustard	cytosol	42.7	59.51
CDX83194	Canola	cytosol	40.32	59.35
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	44.92	57.52
CDY21464	Canola	cytosol	25.87	53.62

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	EntrezGene:100267529
wikigene:100267529	Gene3D:3.30.572.10	Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	ProteinID:CCB60488
ProteinID:CCB60488.1	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom	UniProt:F6I0M2
EMBL:FN596508	GO:GO:0003674	GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0005575
GO:GO:0006139	GO:GO:0006231	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009165	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0032259	GO:GO:0046654	GO:GO:0055114	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926
EntrezGene:LOC100267529	wikigene:LOC100267529	HAMAP:MF_00008	PFAM:PF00186	PFAM:PF00303	PIRSF:PIRSF000389
PRINTS:PR00108	ScanProsite:PS00075	ScanProsite:PS00091	PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7
SUPFAM:SSF53597	SUPFAM:SSF55831	TIGR:TC53750	TIGR:TC61140	TIGRFAMs:TIGR03284	TMHMM:TMhelix
InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase	InterPro:Thymidylate_synthase_AS	UniParc:UPI000210972A	ArrayExpress:VIT_03s0038g04500
EnsemblPlantsGene:VIT_03s0038g04500	EnsemblPlants:VIT_03s0038g04500.t01	unigene:Vvi.9056	RefSeq:XP_002280254	RefSeq:XP_002280254.1	SEG:seg

Description

No Description!

Coordinates

chr3:+:3293150..3300375

Molecular Weight (calculated)

71245.4 Da

IEP (calculated)

8.076

GRAVY (calculated)

-0.042

Length

630 amino acids

Sequence
(BLAST)

001: MEKEGKMGKI KIGLGGKGSH NKKTKILTKV LFSLHFSFFF HQLTLLSFLF QTLVSSLQFS YFLRSTIAAT FWFRFPPVLL HFCKSWLCSL SFQSTSLSLH
101: WVQDSIMASD TVVSLPNGNA NIQPDPQRTY QVVVAATRDM GIGKDGKLPW RLPSDMKIFK DITMTVADTV KKNAVIMGRK TWESIPLEHR PLPGRLNVVL
201: TRSGSFDIAT AENVVICGSM ASALELLAAS PYCLSIEKVF VIGGGQILRE ALNAPGCDAI HITEIETSFE CDTFIPAIDS LVFQPWYSSF PLVENNIRYS
301: FMTYVRVRSS ADESQIQNNG DSGLESIKFE VKKFSFLPKM IFERHEEYIY LRLVEDIISN GVQRDDRTGT GTLSKFGCQM RFNLRKTFPL LTTKKVFWRG
401: VVEELLWFIS GSTNAKVLQE KGIHIWDGNA SRDYLDSIGL ADREEGDLGP IYGFQWRHFG ASYIDMHADY TGQGFDQLLD VINKIKNNPN DRRIILSAWN
501: PSDLKLMALP PCHMFAQFYV SHGELSCQMY QRSADMGLGV PFNIASYALL TCMIAHVCDL VPGDFIHVIG DSHVYLTHIR PLQEQLQKLP KPFPILKINP
601: QKKNIDSFVA ADFQLIGYDP HQKIEMKMAV

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.