CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000581.1-P	Field mustard	cytosol	92.29	87.39
CDY21464	Canola	cytosol	60.28	84.87
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	77.1	67.07
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	11.21	55.17
CDX72487	Canola	cytosol	21.73	49.73
CDY45317	Canola	cytosol	56.54	48.69
CDX89705	Canola	cytosol	57.48	47.86
KRH24440	Soybean	cytosol, nucleus	58.64	47.36
KRH29421	Soybean	cytosol	57.94	46.97
KRH60811	Soybean	nucleus	57.71	46.6
Zm00001d007318_P001	Maize	cytosol	56.78	46.46
Os12t0446900-01	Rice	cytosol	56.31	46.26
Zm00001d030396_P001	Maize	cytosol	30.37	45.61
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	55.37	45.49
CDX69070	Canola	mitochondrion, plastid	58.41	45.45
PGSC0003DMT400001937	Potato	cytosol	55.84	45.35
Zm00001d050448_P001	Maize	cytosol	30.14	45.26
Solyc01g109830.2.1	Tomato	cytosol	55.61	45.16
VIT_18s0001g12940.t01	Wine grape	cytosol	52.8	45.02
KRH51504	Soybean	nucleus	57.48	43.31
CDX75443	Canola	mitochondrion	57.24	43.06
KXG28376	Sorghum	mitochondrion, plastid	56.54	41.58
Zm00001d049188_P008	Maize	mitochondrion	56.31	41.41
TraesCS2D01G520000.1	Wheat	plastid	55.37	41.15
TraesCS2B01G547000.1	Wheat	plastid	55.37	41.07
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	55.14	40.97
VIT_03s0038g04500.t01	Wine grape	golgi	59.35	40.32
CDY02264	Canola	cytosol	58.18	40.29
HORVU2Hr1G114640.8	Barley	cytosol, plastid	55.61	39.27
GSMUA_Achr2P14300_001	Banana	cytosol	46.03	39.01
Os11t0615250-00	Rice	cytosol	5.61	21.62

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10
Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	GO:A0A078D4G9	EnsemblPlants:CDX83194	ProteinID:CDX83194
ProteinID:CDX83194.1	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0006139	GO:GO:0006231	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046654
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00138732001	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926	PFAM:PF00186
PFAM:PF00303	PRINTS:PR00070	ScanProsite:PS00075	PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7
MetaCyc:PWY-3841	MetaCyc:PWY-6614	MetaCyc:PWY-7184	MetaCyc:PWY-7187	MetaCyc:PWY-7198	MetaCyc:PWY-7199
MetaCyc:PWY-7210	SUPFAM:SSF53597	SUPFAM:SSF55831	TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf
InterPro:Thymidylate_synthase	UniPathway:UPA00077	UniPathway:UPA00575	UniParc:UPI0004EEA187	:	:

Description

BnaA03g23120D

Coordinates

chrLK031832:+:346394..348945

Molecular Weight (calculated)

48112.4 Da

IEP (calculated)

5.398

GRAVY (calculated)

-0.179

Length

428 amino acids

Sequence
(BLAST)

001: MEAQNAQRRS YQVVIAATRD MGIGIDLKLP WDLPNEFQFF QDVTSRTSDP RKRNATIMGR KSWEATPLEF RPLPDRLNVV LTRSNCHSIP TDDDNVMVCG
101: SMESALELLA KPPYSFSIEK VFFIGGGELL RHYMNAPSCD AIHLTEVDIS VTCDTFAPRV DTCLYHPWHE EFGYLNLVQN IISNGDMNDN NTLLSKFGCQ
201: LRFNLRKTFP LLTTKACPLY PFMFWVGVVE EILQLISGST YPKEKGINHI WESDKAKEYL DSFGVNATEE DGDHPLLTGL YWSYSDASQE FNQISDVINK
301: IKNNPHDRGI TLSACKLSIS PCQTFAQFYV ANGELSCQIY QSSTEASLGI PFSIAAYSLL TCIMAHVCDV VAGDFIHLIG DAHVNTSHTK AIQRQLQISP
401: KPFPILKINP AKKKIDHLEA SDLDLLDI

Best Arabidopsis Sequence Match ( AT2G21550.2 )
(BLAST)

001: MASTGETICN NGQSAVSVTR RRSYQVVIAA TRDMGLGMDM KLPWDLPSEY QFFQDVTTRT SDPTKRNATI MGRKSWESTP LEIRPLPGRL NIVLTKSSCH
101: NIAIDENVLV SSSMESALEL LATEPYSLSI EKVFVIGGGE LLRNYMNASI CDAIHLTEID ISVPCDAFAP RVDTSLYRPW YSSFPVVENG IRYSFNTYVR
201: RKDAIVGSGE KKSVAESDLK EYSFLPKMVF ERHEEFGYLN LVQNIISSGD MNDNSTLSKF GCQMRFNLRK TFPLLTTKKI FWLGVVEEIL QLISGSNNPK
301: ENGSHIWDTD EAKEYLDSFG VNATEEDGDN PFLHGLHWKH CDASQEFSQL SDVINKIKNN PHDQRIMLAA CNPLDFKLSV SPCHTFTQFY VANGEVSCQI
401: YQSSTEASIG IPFSIATYSL LTCIIAHVCD LGAGDFIHVI GQAYINKAHV KAIQKQLQIS PKPFPILKIN PEKKKMDNFE ASDLELMRI

Arabidopsis Description

Bifunctional dihydrofolate reductase-thymidylate synthase [Source:UniProtKB/TrEMBL;Acc:Q9SIK4]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.