Factsheet for Zm00001d030396_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050448_P001	Maize	cytosol	96.49	96.49
Zm00001d007318_P001	Maize	cytosol	96.14	52.39
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	83.16	45.49
KXG28376	Sorghum	mitochondrion, plastid	92.63	45.36
Zm00001d049188_P008	Maize	mitochondrion	91.58	44.85
VIT_18s0001g12940.t01	Wine grape	cytosol	68.42	38.84
KRH60811	Soybean	nucleus	70.18	37.74
CDX89705	Canola	cytosol	67.02	37.16
Bra011543.1-P	Field mustard	cytosol	64.56	36.87
AT2G16370.1	Thale cress	cytosol	66.67	36.61
CDY45317	Canola	cytosol	63.16	36.22
KRH51504	Soybean	nucleus	71.23	35.74
Bra017662.1-P	Field mustard	cytosol	63.16	35.71
Solyc01g109830.2.1	Tomato	cytosol	65.96	35.67
KRH24440	Soybean	cytosol, nucleus	66.32	35.66
KRH29421	Soybean	cytosol	65.96	35.61
PGSC0003DMT400001937	Potato	cytosol	64.91	35.1
CDX69070	Canola	mitochondrion, plastid	64.56	33.45
AT4G34570.1	Thale cress	mitochondrion	65.26	32.92
CDX75443	Canola	mitochondrion	63.86	31.99
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	54.04	31.3
CDY02264	Canola	cytosol	67.37	31.07
Bra013079.1-P	Field mustard	cytosol	67.37	31.07
CDX83194	Canola	cytosol	45.61	30.37
Bra000581.1-P	Field mustard	cytosol	48.07	30.31
GSMUA_Achr2P14300_001	Banana	cytosol	49.82	28.12
CDY21464	Canola	cytosol	18.95	17.76
CDX72487	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10
Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	UniProt:A0A1D6KCE1	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf
InterPro:DHFR_CS	InterPro:DHFR_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004146
GO:GO:0004799	GO:GO:0005488	GO:GO:0006139	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259
GO:GO:0046654	GO:GO:0050661	GO:GO:0055114	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926
ProteinID:ONM00935.1	PFAM:PF00186	PFAM:PF00303	PRINTS:PR00070	ScanProsite:PS00075	PFscan:PS51330
PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	SUPFAM:SSF53597	SUPFAM:SSF55831	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf
UniParc:UPI0004DE8B8C	EnsemblPlantsGene:Zm00001d030396	EnsemblPlants:Zm00001d030396_P001	EnsemblPlants:Zm00001d030396_T001	SEG:seg	:

Description

Bifunctional dihydrofolate reductase-thymidylate synthase 2

Coordinates

chr1:-:129217168..129219137

Molecular Weight (calculated)

32294.0 Da

IEP (calculated)

8.778

GRAVY (calculated)

-0.192

Length

285 amino acids

Sequence
(BLAST)

001: MGIGKDGVLP WKLPGDLKFF KEFTLITSDP VKKNAVIMGR KTWESIPVKS RPLPGRLNVI LTRSGTFDFA TVENVVICAS MESALKLLAS TPYCLSIEKV
101: FVIGGGQVLR EYLKGPACEA IHLTDIQSSI ECDTFIPPVD FSVFQPWYSS FPVIESNIRH SFVSFVRVRK SVAETHESNG KESTEVDTKN DKFEKENFSF
201: LPKMVYDRHE EYQYLNLVED IIRSGAQKND RTGTGTLSKF GCQMRFNLRK KFPLMTTKRV FWRGVVEELL WFISGSTNAK VCSDS

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.