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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra013079.1-P Field mustard cytosol 97.73 97.73
CDX89705 Canola cytosol 76.38 91.83
AT2G16370.1 Thale cress cytosol 72.33 86.13
CDX72487 Canola cytosol 25.89 85.56
CDY45317 Canola cytosol 63.92 79.48
CDX69070 Canola mitochondrion, plastid 66.67 74.91
KRH29421 Soybean cytosol 61.97 72.54
CDX75443 Canola mitochondrion 66.67 72.41
Zm00001d007318_P001 Maize cytosol 61.16 72.28
PGSC0003DMT400001937 Potato cytosol 61.49 72.11
KRH24440 Soybean cytosol, nucleus 61.81 72.08
Os12t0446900-01 Rice cytosol 60.68 71.98
VIT_18s0001g12940.t01 Wine grape cytosol 58.25 71.71
KRH60811 Soybean nucleus 61.49 71.7
Os11t0484400-01 Rice cytosol, plasma membrane, plastid 60.36 71.59
Solyc01g109830.2.1 Tomato cytosol 61.0 71.54
Zm00001d030396_P001 Maize cytosol 31.07 67.37
Zm00001d050448_P001 Maize cytosol 30.74 66.67
KRH51504 Soybean nucleus 61.0 66.37
KXG28376 Sorghum mitochondrion, plastid 61.33 65.12
Zm00001d049188_P008 Maize mitochondrion 61.16 64.95
TraesCS2B01G547000.1 Wheat plastid 59.39 63.6
TraesCS2A01G518600.1 Wheat mitochondrion, plastid 59.06 63.37
VIT_18s0075g01010.t01 Wine grape cytosol, mitochondrion 8.9 63.22
TraesCS2D01G520000.1 Wheat plastid 58.9 63.19
VIT_03s0038g04500.t01 Wine grape golgi 62.3 61.11
HORVU2Hr1G114640.8 Barley cytosol, plastid 59.22 60.4
GSMUA_Achr2P14300_001 Banana cytosol 48.87 59.8
CDX83194 Canola cytosol 40.29 58.18
CDY21464 Canola cytosol 25.4 51.64
Os11t0615250-00 Rice cytosol 7.61 42.34
Protein Annotations
KEGG:00240+2.1.1.45KEGG:00670+1.5.1.3KEGG:00670+1.5.1.3+2.1.1.45KEGG:00670+2.1.1.45KEGG:00790+1.5.1.3Gene3D:1.10.10.2780
MapMan:17.1.3.1.26Gene3D:3.30.572.10Gene3D:3.40.430.10MapMan:6.3.1.2MapMan:7.5.5GO:A0A078ENI2
EnsemblPlants:CDY02264ProteinID:CDY02264ProteinID:CDY02264.1InterPro:DHFR-TSInterPro:DHFR-like_dom_sfInterPro:DHFR_CS
InterPro:DHFR_domGO:GO:0003674GO:GO:0003824GO:GO:0004146GO:GO:0004799GO:GO:0006139
GO:GO:0006231GO:GO:0006730GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016740GO:GO:0046654GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00113691001InterPro:IPR001796InterPro:IPR024072
InterPro:IPR036926HAMAP:MF_00008PFAM:PD012268PFAM:PF00186PFAM:PF00303PFAM:PF03297
PIRSF:PIRSF000389PRINTS:PR00108ScanProsite:PS00075ScanProsite:PS00091PFscan:PS51330PANTHER:PTHR11548
PANTHER:PTHR11548:SF7MetaCyc:PWY-3841MetaCyc:PWY-6614MetaCyc:PWY-7184MetaCyc:PWY-7187MetaCyc:PWY-7198
MetaCyc:PWY-7199MetaCyc:PWY-7210InterPro:Ribosomal_S25SUPFAM:SSF53597SUPFAM:SSF55831TIGRFAMs:TIGR03284
InterPro:Thymidate_synth/dCMP_MeaseInterPro:Thymidate_synth/dCMP_Mease_sfInterPro:Thymidylate_synthaseInterPro:Thymidylate_synthase_ASUniPathway:UPA00077UniPathway:UPA00575
UniParc:UPI0004EDCEF7SEG:seg::::
Description
BnaA03g39030D
Coordinates
chrLK031932:+:1048342..1052501
Molecular Weight (calculated)
69233.1 Da
IEP (calculated)
9.205
GRAVY (calculated)
-0.379
Length
618 amino acids
Sequence
(BLAST)
001: MTTTLNADAI TPDPQRTYQV VVAATKQMGI GKDGKLPWNL PTDLKFFKDI TQTTSDPTKK NAVVMGRKTW EAIPTKHRPL PGRLNVVLTR SGGFDIANTE
101: NVVTCSSVDS ALHLLAAPPY CLSIERVFVI GGGDILREAL NMPSCDAIHL TEIDTSIECD TFIPEVDACV YQPWCSSVPV TENGLRFRFT SFVRVKSSAD
201: ESSSNGSQQS PLQFNGKRFS FLPKMVFDQH EEFRYLNMVG DIISNGNVKN DRTGTGTLSK FGTQMKFNLR RSFPLLTTKR VFWRGVVEEL LWFISGSTNA
301: KVLQGKGIHI WDGNASREYL DGIGLSEREE GDLGRVYGFQ WRHFGAKYTD MHADYTSQGF DQLADVIDKI KNNPDDRRII LSAWNPSDLK LMALPPCHMF
401: AQFYVAEGEL SCQMYQRSAD MSLGVPFNIA SYSLLTCMLA HVCDLVPGDF VHVIGDAHVY RTHVRPLQEQ LQNPPKPFPI NAEKKDIDSF VADDFDLIGY
501: EPHKKIEMKM AAPKKDKVPP PSSKPAKSGG GKQKKKKWSK GKQKEKVNNM VLFDQATYDK LLSEAPKFKL ITPSILSDRL RINGSLARKA IRDLMAKGTI
601: RMVSTHSSQQ IYTRATHN
Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)
001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV
Arabidopsis Description
THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.