Factsheet for TraesCS2B01G547000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	96.19	96.35
TraesCS2D01G520000.1	Wheat	plastid	95.49	95.66
HORVU2Hr1G114640.8	Barley	cytosol, plastid	90.47	86.14
Os12t0446900-01	Rice	cytosol	76.43	84.64
CDX72487	Canola	cytosol	26.17	80.75
Bra011543.1-P	Field mustard	cytosol	63.43	73.35
CDX89705	Canola	cytosol	64.82	72.76
VIT_18s0001g12940.t01	Wine grape	cytosol	63.26	72.71
AT2G16370.1	Thale cress	cytosol	64.99	72.25
KRH60811	Soybean	nucleus	66.2	72.08
KRH29421	Soybean	cytosol	65.68	71.78
Bra017662.1-P	Field mustard	cytosol	62.56	71.63
CDY45317	Canola	cytosol	61.35	71.23
Solyc01g109830.2.1	Tomato	cytosol	64.99	71.16
KRH24440	Soybean	cytosol, nucleus	65.34	71.13
PGSC0003DMT400001937	Potato	cytosol	64.12	70.21
KRH51504	Soybean	nucleus	67.24	68.31
CDX69070	Canola	mitochondrion, plastid	64.82	68.0
AT4G34570.1	Thale cress	mitochondrion	64.64	66.02
CDX75443	Canola	mitochondrion	63.78	64.67
GSMUA_Achr2P14300_001	Banana	cytosol	55.81	63.76
Bra013079.1-P	Field mustard	cytosol	63.95	59.71
CDY02264	Canola	cytosol	63.6	59.39
CDX83194	Canola	cytosol	41.07	55.37
Bra000581.1-P	Field mustard	cytosol	43.15	55.09
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	45.58	53.46
CDY21464	Canola	cytosol	26.52	50.33

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10
Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS
InterPro:DHFR_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0006139
GO:GO:0006231	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0046654	GO:GO:0055114	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926
HAMAP:MF_00008	PFAM:PF00186	PFAM:PF00303	PIRSF:PIRSF000389	PRINTS:PR00108	ScanProsite:PS00075
ScanProsite:PS00091	PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	SUPFAM:SSF53597	SUPFAM:SSF55831
TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase	InterPro:Thymidylate_synthase_AS	EnsemblPlantsGene:TraesCS2B01G547000
EnsemblPlants:TraesCS2B01G547000.1	TIGR:cd00209	TIGR:cd00351	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:-:743736751..743743307

Molecular Weight (calculated)

64931.9 Da

IEP (calculated)

8.302

GRAVY (calculated)

-0.296

Length

577 amino acids

Sequence
(BLAST)

001: MLSASKLLSK GPDISNLYMI ATPFFSTRTT AISRWPRLKS LEAINKLKSS CFHQSQMMAG VTNGNSHSDI QRKYQVVVAA TREMGIGKDG ALPWKLPSDL
101: KFFKDLTMAT ADPSKKNAVI MGRKTWGSIP TKFRPLPGRL NVILTRSGSS DYATVENVVT CGSLDSSLEL LASAPYSSTI EKAFLIGGGQ VLRESLNASA
201: CEAIHLTDIE STIECDTFIP PIDPLVFHPW YSSSPVVENN IRHSFATFVR VRKSAEEAND SNLSELTSND AKKEKFEIQN FSFLPKMIFE KHDEYQYLNL
301: VQDILRNGAR KNDRTGTGTI SKFGCQMRFN LRKNFPLLTT KRVFWRGVLE ELLWFISGST NAKVLQEKNI RIWDGNASRE YLDSIGLSQR EEGDLGPVYG
401: FQWRHFGAEY TDMHADYTGK GFDQLADVIN KIKNNPDDRR IIMSAWNPTD LKKMALPPCH MFAQFYVENG ELSCQMYQRS ADMGLGVPFN IASYSLLTCM
501: LAQVCDLSPG EFVHVIGDAH VYSTHVQALE EQLQKQPKPF PILKINPLKK DIDSFVASDF KLVSYDPHQK IEMKMAV

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.