Factsheet for Solyc01g109830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 2
cytosol 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001937	Potato	cytosol	94.88	94.88
CDX72487	Canola	cytosol	29.22	82.35
KRH29421	Soybean	cytosol	77.04	76.89
KRH60811	Soybean	nucleus	76.66	76.23
KRH24440	Soybean	cytosol, nucleus	76.66	76.23
Bra011543.1-P	Field mustard	cytosol	71.35	75.35
AT2G16370.1	Thale cress	cytosol	74.19	75.34
CDX89705	Canola	cytosol	73.24	75.1
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	73.81	74.66
Bra017662.1-P	Field mustard	cytosol	71.16	74.4
CDY45317	Canola	cytosol	69.83	74.04
Os12t0446900-01	Rice	cytosol	73.06	73.9
Zm00001d007318_P001	Maize	cytosol	71.92	72.47
KRH51504	Soybean	nucleus	76.66	71.13
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	11.57	70.11
CDX69070	Canola	mitochondrion, plastid	72.11	69.09
AT4G34570.1	Thale cress	mitochondrion	72.87	67.96
CDX75443	Canola	mitochondrion	71.73	66.43
Zm00001d030396_P001	Maize	cytosol	35.67	65.96
VIT_03s0038g04500.t01	Wine grape	golgi	78.56	65.71
Zm00001d049188_P008	Maize	mitochondrion	72.11	65.29
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	71.35	65.28
Zm00001d050448_P001	Maize	cytosol	35.29	65.26
TraesCS2D01G520000.1	Wheat	plastid	71.16	65.1
TraesCS2B01G547000.1	Wheat	plastid	71.16	64.99
KXG28376	Sorghum	mitochondrion, plastid	71.73	64.95
GSMUA_Achr2P14300_001	Banana	cytosol	59.01	61.58
HORVU2Hr1G114640.8	Barley	cytosol, plastid	70.59	61.39
Bra013079.1-P	Field mustard	cytosol	71.73	61.16
CDY02264	Canola	cytosol	71.54	61.0
Bra000581.1-P	Field mustard	cytosol	48.2	56.19
CDX83194	Canola	cytosol	45.16	55.61
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	51.8	55.49
CDY21464	Canola	cytosol	29.03	50.33
Os11t0615250-00	Rice	cytosol	8.16	38.74

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10
Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS
InterPro:DHFR_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0006139
GO:GO:0006231	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009058	GO:GO:0009165	GO:GO:0009987	GO:GO:0016491	GO:GO:0016740	GO:GO:0032259
GO:GO:0046654	GO:GO:0055114	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926	UniProt:K4B3J6
HAMAP:MF_00008	PFAM:PF00186	PFAM:PF00303	PIRSF:PIRSF000389	PRINTS:PR00108	ScanProsite:PS00075
ScanProsite:PS00091	PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	SUPFAM:SSF53597	SUPFAM:SSF55831
EnsemblPlantsGene:Solyc01g109830.2	EnsemblPlants:Solyc01g109830.2.1	TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase
InterPro:Thymidylate_synthase_AS	UniParc:UPI0002768BA9	SEG:seg	:	:	:

Description

Bifunctional dihydrofolate reductase-thymidylate synthase [Source:UniProtKB/TrEMBL;Acc:K4B3J6]

Coordinates

chr1:-:96675182..96679187

Molecular Weight (calculated)

59136.8 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.224

Length

527 amino acids

Sequence
(BLAST)

001: MASETKKGVS NGNGNAHFTP QRTYQVVVAA TQSMGIGKEG KLPWRLPTDL KFFKGITGTT TDPTKRNAVV MGRKTWESIP IEHRPLPGRL NVVLTRSGSF
101: DIATAENVVI CGSLGSALQL LASSPYCLSI ENVFVIGGGE IFRDSLNAHG CDAVHITEIE TDIACDTFTP AIDTSVFRPW YSSFPVIENK IRYSFTTYVR
201: VKNSGVETVN QSNSEIPENG SDSSDIEVKS FSFLPKMIFE KHEEYMYLRL VEDIISNGML KDDRTGTGTL SKFGCQMRYN LRRSFPLLTT KRVFWRGVIE
301: ELLWFISGST SAKVLQEKGI HIWDGNASRD YLDSIDLKDR EEGDLGPVYG FQWRHFGARY IDMHTDYSGQ GFDQLADVIN KVKNNPDDRR IILSAWNPSD
401: LKLMALPPCH MFAQFYVANG ELSCQMYQRS ADMGLGVPFN IASYALLTCM IAHVSGLVPG DFIHVLGDAH VYRNHVRPLQ DQLQKLPRPF PVLKINPLKK
501: DIDSFVAADF ELVGYDPHQR IEMKMAI

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.