Factsheet for Zm00001d049188_P008

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28376	Sorghum	mitochondrion, plastid	95.02	95.02
Zm00001d007318_P001	Maize	cytosol	85.22	94.84
Zm00001d050448_P001	Maize	cytosol	44.85	91.58
Zm00001d030396_P001	Maize	cytosol	44.85	91.58
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	79.38	88.68
CDX72487	Canola	cytosol	25.77	80.21
Bra011543.1-P	Field mustard	cytosol	64.26	74.95
CDX89705	Canola	cytosol	65.98	74.71
KRH29421	Soybean	cytosol	67.7	74.62
KRH24440	Soybean	cytosol, nucleus	67.35	73.96
VIT_18s0001g12940.t01	Wine grape	cytosol	63.75	73.9
KRH60811	Soybean	nucleus	67.01	73.58
AT2G16370.1	Thale cress	cytosol	65.46	73.41
Bra017662.1-P	Field mustard	cytosol	62.89	72.62
CDY45317	Canola	cytosol	61.86	72.43
Solyc01g109830.2.1	Tomato	cytosol	65.29	72.11
PGSC0003DMT400001937	Potato	cytosol	64.26	70.97
KRH51504	Soybean	nucleus	68.04	69.72
CDX69070	Canola	mitochondrion, plastid	65.64	69.45
CDX75443	Canola	mitochondrion	65.64	67.14
AT4G34570.1	Thale cress	mitochondrion	65.12	67.08
GSMUA_Achr2P14300_001	Banana	cytosol	56.53	65.15
CDY02264	Canola	cytosol	64.95	61.16
Bra013079.1-P	Field mustard	cytosol	64.78	61.0
CDX83194	Canola	cytosol	41.41	56.31
Bra000581.1-P	Field mustard	cytosol	42.78	55.09
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	46.22	54.67
CDY21464	Canola	cytosol	26.29	50.33

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	EntrezGene:100286018
Gene3D:3.30.572.10	Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	UniProt:A0A1D6PSZ3	ProteinID:AQK49790.1
InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004146	GO:GO:0004799	GO:GO:0006139	GO:GO:0006231	GO:GO:0006545	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009165	GO:GO:0009987
GO:GO:0016491	GO:GO:0016740	GO:GO:0032259	GO:GO:0046654	GO:GO:0055114	InterPro:IPR001796
InterPro:IPR024072	InterPro:IPR036926	HAMAP:MF_00008	PFAM:PF00186	PFAM:PF00303	PIRSF:PIRSF000389
PRINTS:PR00108	ScanProsite:PS00075	ScanProsite:PS00091	PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7
SUPFAM:SSF53597	SUPFAM:SSF55831	TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase
InterPro:Thymidylate_synthase_AS	UniParc:UPI0004DE8F5D	EnsemblPlantsGene:Zm00001d049188	EnsemblPlants:Zm00001d049188_P008	EnsemblPlants:Zm00001d049188_T008	SEG:seg

Description

Bifunctional dihydrofolate reductase-thymidylate synthase

Coordinates

chr4:-:19758469..19764796

Molecular Weight (calculated)

65794.3 Da

IEP (calculated)

8.327

GRAVY (calculated)

-0.200

Length

582 amino acids

Sequence
(BLAST)

001: MLVAEVLRAG AYISRFSRRA CKVAIFSSIA CSPTSQFRRL QFLDLSIKSR PYHFSQSCLM ALAAAPASGD SQSGPQRNYQ VVVAATRDMG IGKGGVMPWK
101: LLGDLKFFKE LTLTTTDPAK KNAVIMGRKT WESIPVKSRP LPGRLNVILT RSGSFDFATV ENVVICGSMK SALELLASTP YCLSIEKVFV IGGGQVLREY
201: LNGPACEAIH LTDIQSSIEC DTFIPPVDFS VFQPWYSSFP VVESNIRHSF VTFVRVRKSV AETHESNGKE STEIDTKNDK FEIENFSFLP KIVYDRHEEY
301: QYLNLVEDII RFGAQKNDRT GTGTLSKFGC QMRFNLRKNF PLLTTKRVFW RGVVEELLWF ISGSTNAKVL QEKGIHIWDG NASREYLDRI GLAHREEGDL
401: GPVYGFQWRH FGAEYTDMHA DYTGKGFDQL MDVIDKIKNN PDDRRIILSA WNPSDLKKMA LPPCHMFAQF YVENGELSCQ MYQRSADMGL GVPFNIASYS
501: LLTYMIAQVC DLSPGDFVHV IGDAHVYRNH VRALEEQIQK MPKPFPILKI NPSKKDIDSF MASDFKLVGY DPHQKLEMKM AV

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.