CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13786	Canola	cytosol	90.08	89.39
CDX76957	Canola	cytosol	94.27	75.3
Bra031226.1-P	Field mustard	cytosol	91.22	72.21
Solyc03g059310.2.1	Tomato	cytosol	56.87	63.68
CDX92201	Canola	cytosol	69.08	59.34
CDX95783	Canola	cytosol	68.7	59.02
TraesCS4D01G023600.1	Wheat	cytosol	66.03	54.75
TraesCS4B01G026200.1	Wheat	cytosol	66.03	54.75
TraesCS4A01G288600.1	Wheat	cytosol	66.03	54.75
Os03t0681700-01	Rice	plasma membrane	66.03	54.75
Zm00001d007577_P001	Maize	extracellular, mitochondrion	65.65	54.43
HORVU4Hr1G003940.2	Barley	cytosol	65.65	54.43
GSMUA_Achr10P...	Banana	cytosol	65.65	54.43
EES08772	Sorghum	cytosol	65.65	54.43
AT2G22040.1	Thale cress	cytosol	64.5	53.99
KRH11050	Soybean	cytosol	64.5	53.48
KRH21226	Soybean	cytosol	64.12	53.16
VIT_06s0004g04740.t01	Wine grape	cytosol	62.6	51.9

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.7.1.3	UniProt:A0A078FH76	EnsemblPlants:CDY13785	ProteinID:CDY13785	ProteinID:CDY13785.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0031929
GO:GO:0031931	GO:GO:0031932	GO:GO:0032008	EnsemblPlantsGene:GSBRNA2T00078222001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:MLST8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDD9B6
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaA09g42870DBnaA09g42870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FH76]

Coordinates

chrLK032038:-:348643..350416

Molecular Weight (calculated)

29569.3 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.141

Length

262 amino acids

Sequence
(BLAST)

001: MKARHLAAAC NPYIRLFDIN SHHGHVRTFV GHTSNVMAVG FHADGNSMYS GSEDGTVRIW DLRYNQFFFQ LKSIVTPINT VVLHPNQIEL ISGDQDGIIR
101: VWDTRMNSCT IELVPEPDTA IRSLSVMRDG SMLAAANDGG TCYIWNIVRE SQVITKFEPI HKLQAHNRHI LKCVLSPDNK YLATASSDKT VKIWNVDSFT
201: LDKVLTGHQR WVWDCAFSVD AKFILTASSD MTARLWSMEE GNELRVYRGH NKAIVCCALN DV

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.