Factsheet for Solyc03g059310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g109830.2.1
Solyc06g065650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18140.1	Solyc01g109830.2.1	AT2G16370.1	21798944
AT3G18140.1	Solyc06g065650.2.1	AT4G32570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21226	Soybean	cytosol	93.16	68.99
KRH11050	Soybean	cytosol	93.16	68.99
TraesCS4D01G023600.1	Wheat	cytosol	87.61	64.87
HORVU4Hr1G003940.2	Barley	cytosol	87.61	64.87
GSMUA_Achr10P...	Banana	cytosol	87.61	64.87
TraesCS4B01G026200.1	Wheat	cytosol	87.18	64.56
TraesCS4A01G288600.1	Wheat	cytosol	87.18	64.56
EES08772	Sorghum	cytosol	87.18	64.56
CDX92201	Canola	cytosol	83.76	64.26
CDX95783	Canola	cytosol	83.76	64.26
Zm00001d007577_P001	Maize	extracellular, mitochondrion	86.75	64.24
AT3G18140.1	Thale cress	cytosol	83.33	63.93
Os03t0681700-01	Rice	plasma membrane	85.9	63.61
Bra022283.1-P	Field mustard	cytosol	63.25	60.66
VIT_08s0007g08080.t01	Wine grape	cytosol, plastid	91.45	60.45
CDY13785	Canola	cytosol	63.68	56.87
CDY13786	Canola	cytosol	63.25	56.06
AT2G22040.1	Thale cress	cytosol	72.22	53.99
CDX76957	Canola	cytosol	64.53	46.04
Bra031226.1-P	Field mustard	cytosol	64.96	45.92

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.7.1.3	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0031929	GO:GO:0031931	GO:GO:0031932	GO:GO:0032008
GO:GO:0032956	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BGX8	InterPro:MLST8
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19842
PANTHER:PTHR19842:SF0	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc03g059310.2	EnsemblPlants:Solyc03g059310.2.1	UniParc:UPI0002768ECD
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

No Description!

Coordinates

chr3:+:28644443..28654460

Molecular Weight (calculated)

26072.7 Da

IEP (calculated)

5.540

GRAVY (calculated)

-0.250

Length

234 amino acids

Sequence
(BLAST)

001: MAVGFQCDGN WMYSGSEDGT VKIWDLRAPG CQREYESRAA VNTVVLHPNQ TELISGDQNG NIRVWDLRAN SCSCELVPEV DTAVRSLTVM WDGSLIVAAN
101: NRGTCYVWRL LRGTETMTNF EPLHKLQAHD GYILKCLLSP ELCEPNRYLA TASSDHTVKI WNVDGFTLEK TLIGHERWVW DCVFSVDGAF LITASSDTTT
201: RLWSTSTGKD IKVYQGHHKA TVCCALHDGP EPSS

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.