Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra011357.1-P | |
| Bra013079.1-P | |
| Bra040086.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G18140.1 | Bra013079.1-P | AT2G16370.1 | 21798944 |
| AT3G18140.1 | Bra011357.1-P | AT4G32570.1 | 21798944 |
| AT3G18140.1 | Bra040086.1-P | AT4G32570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92201 | Canola | cytosol | 99.59 | 79.67 |
| CDX95783 | Canola | cytosol | 99.18 | 79.34 |
| AT3G18140.1 | Thale cress | cytosol | 97.13 | 77.7 |
| KRH11050 | Soybean | cytosol | 86.89 | 67.09 |
| KRH21226 | Soybean | cytosol | 86.48 | 66.77 |
| EES08772 | Sorghum | cytosol | 85.66 | 66.14 |
| HORVU4Hr1G003940.2 | Barley | cytosol | 85.66 | 66.14 |
| Zm00001d007577_P001 | Maize | extracellular, mitochondrion | 85.66 | 66.14 |
| GSMUA_Achr10P... | Banana | cytosol | 85.25 | 65.82 |
| TraesCS4A01G288600.1 | Wheat | cytosol | 85.25 | 65.82 |
| TraesCS4B01G026200.1 | Wheat | cytosol | 85.25 | 65.82 |
| TraesCS4D01G023600.1 | Wheat | cytosol | 85.25 | 65.82 |
| Solyc03g059310.2.1 | Tomato | cytosol | 60.66 | 63.25 |
| Os03t0681700-01 | Rice | plasma membrane | 80.74 | 62.34 |
| VIT_06s0004g04740.t01 | Wine grape | cytosol | 79.92 | 61.71 |
| Bra031226.1-P | Field mustard | cytosol | 71.31 | 52.57 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:27.7.1.3 | EnsemblPlantsGene:Bra022283 | EnsemblPlants:Bra022283.1 | EnsemblPlants:Bra022283.1-P | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005975 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0031929 |
| GO:GO:0031931 | GO:GO:0031932 | GO:GO:0032008 | GO:GO:0048571 | GO:GO:1900088 | GO:GO:1900091 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M4E0I6 | InterPro:MLST8 | PFAM:PF00400 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19842 | PANTHER:PTHR19842:SF0 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000254736F | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : | : |
Description
AT3G18140 (E=2e-102) | transducin family protein / WD-40 repeat family protein
Coordinates
chrA05:+:18651308..18653084
Molecular Weight (calculated)
27556.9 Da
IEP (calculated)
7.732
GRAVY (calculated)
-0.292
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQPCVVLAT ASYDHTIRFW EAESGRCYRT IQYPDSHVNR LEITPDKRHL AAACNPHIRL FDVNSNSPQP TELISGDQNG NIRVWDLRAN SCSCELVPEV
101: DTPVRSLTVM WDGTMVVAAN NRGTCYVWRL LRGKQTMTEF EPLHKLQAHN GHILKCLLSP ANKYLATASS DKTVKIWNVD GFKLEKILTG HQRWVWDCVF
201: SVDGEFLVTA SSDMTARLWS MPAGKEVKVY QGHHKATVCC ALHD
101: DTPVRSLTVM WDGTMVVAAN NRGTCYVWRL LRGKQTMTEF EPLHKLQAHN GHILKCLLSP ANKYLATASS DKTVKIWNVD GFKLEKILTG HQRWVWDCVF
201: SVDGEFLVTA SSDMTARLWS MPAGKEVKVY QGHHKATVCC ALHD
001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD
Arabidopsis Description
LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.