Factsheet for Bra011357.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000891.1-P
Bra008559.1-P
Bra010569.1-P
Bra020704.1-P
Bra020748.1-P
Bra021379.1-P
Bra021674.1-P
Bra022817.1-P
Bra036176.1-P
Bra037488.1-P
Bra037489.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32570.1	Bra021674.1-P	AT2G30880.1	21798944
AT4G32570.1	Bra022817.1-P	AT2G30880.1	21798944
AT4G32570.1	Bra021379.1-P	AT3G03000.1	21798944
AT4G32570.1	Bra020748.1-P	AT3G06430.1	21798944
AT4G32570.1	Bra000891.1-P	AT4G02150.1	21798944
AT4G32570.1	Bra008559.1-P	AT4G02150.1	21798944
AT4G32570.1	Bra010569.1-P	AT4G36690.1	21798944
AT4G32570.1	Bra020704.1-P	AT5G48385.1	21798944
AT4G32570.1	Bra036176.1-P	AT5G48385.1	21798944
AT4G32570.1	Bra037488.1-P	AT5G48385.1	21798944
AT4G32570.1	Bra037489.1-P	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75256	Canola	nucleus	98.84	98.55
Bra040086.1-P	Field mustard	nucleus	75.87	73.11
AT4G32570.1	Thale cress	nucleus	73.84	70.36
KRH61848	Soybean	cytosol, plastid	40.12	33.25
KRH52520	Soybean	cytosol, plastid	38.66	32.2
VIT_04s0008g04950.t01	Wine grape	plastid	39.83	31.07
Solyc06g065650.2.1	Tomato	nucleus	36.05	29.04
PGSC0003DMT400067114	Potato	nucleus	35.47	28.57
KRH05071	Soybean	nucleus	30.81	27.97
GSMUA_Achr6P01670_001	Banana	cytosol	27.33	25.9
GSMUA_Achr2P08320_001	Banana	nucleus	20.35	22.36
GSMUA_AchrUn_...	Banana	cytosol	20.64	21.71

Protein Annotations

EnsemblPlants:Bra011357.1	EnsemblPlants:Bra011357.1-P	EnsemblPlantsGene:Bra011357	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PANTHER:PTHR33077:SF8	PFAM:PF06200	PFscan:PS51320	SEG:seg	SMART:SM00979	UniParc:UPI000254642B
UniProt:M4D4F3	MapMan:15.5.45	:	:	:	:

Description

AT4G32570 (E=4e-122) TIFY8 | TIFY8 (TIFY DOMAIN PROTEIN 8)

Coordinates

chrA01:+:2570216..2572122

Molecular Weight (calculated)

37394.6 Da

IEP (calculated)

10.302

GRAVY (calculated)

-0.826

Length

344 amino acids

Sequence
(BLAST)

001: MMKRNNNDDV DSRLRVKEQQ DKLLFHDFLG SKTPTLASTS MLPLDKADKP VTASASSAGG RGGLSSTSDL GSGVGSHLDG IQLFGQRREA SGSIMSNRFS
101: GNKRSNSDSH ITTQEQHPEA LHWSKLLRSG PGSHSVNVAN QSPRGGGQIS HLLHQLSSSR FKDDAVAQTA ADEGSRTGMK GPRIMSSFTM PNPSKVECLT
201: PSSTANRKYL TSSTKQMTIF YGGQAHVFDD VHPNKADVIM ALAGSSGGSW STDLSHKLKT KNNTSDGPYK QGQVYEGGGS SRETPFLSPD IRARPVHQDT
301: TSSPCHRIFT QPGREHQGRI ISRRRDTRDP VRISDPEKKP HDYV

Best Arabidopsis Sequence Match ( AT4G32570.1 )
(BLAST)

001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T

Arabidopsis Description

TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.