Factsheet for Solyc06g065650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g057200.2.1
Solyc02g062920.2.1
Solyc02g085570.2.1
Solyc03g097100.1.1
Solyc05g021100.2.1
Solyc06g007640.2.1
Solyc06g009750.2.1
Solyc06g082930.2.1
Solyc09g055760.2.1
Solyc10g081530.1.1
Solyc12g008750.1.1
Solyc12g098990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32570.1	Solyc05g021100.2.1	AT2G30880.1	21798944
AT4G32570.1	Solyc03g097100.1.1	AT3G03000.1	21798944
AT4G32570.1	Solyc01g057200.2.1	AT3G06430.1	21798944
AT4G32570.1	Solyc12g098990.1.1	AT3G06430.1	21798944
AT4G32570.1	Solyc10g081530.1.1	AT3G28715.1	21798944
AT4G32570.1	Solyc06g009750.2.1	AT4G02150.1	21798944
AT4G32570.1	Solyc02g062920.2.1	AT4G36690.1	21798944
AT4G32570.1	Solyc02g085570.2.1	AT4G36690.1	21798944
AT4G32570.1	Solyc12g008750.1.1	AT4G36690.1	21798944
AT4G32570.1	Solyc06g007640.2.1	AT5G48385.1	21798944
AT4G32570.1	Solyc06g082930.2.1	AT5G48385.1	21798944
AT4G32570.1	Solyc09g055760.2.1	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067114	Potato	nucleus	91.8	91.8
VIT_04s0008g04950.t01	Wine grape	plastid	55.74	53.97
KRH52520	Soybean	cytosol, plastid	45.2	46.73
KRH61848	Soybean	cytosol, plastid	45.2	46.51
KRH05071	Soybean	nucleus	35.36	39.84
AT4G32570.1	Thale cress	nucleus	31.38	37.12
Bra040086.1-P	Field mustard	nucleus	30.91	36.97
CDY23332	Canola	nucleus	30.45	36.52
CDX68863	Canola	nucleus	29.27	36.34
Bra011357.1-P	Field mustard	nucleus	29.04	36.05
CDY51673	Canola	nucleus	30.21	36.03
CDX75256	Canola	nucleus	28.81	35.65
GSMUA_AchrUn_...	Banana	cytosol	26.23	34.25
GSMUA_Achr6P01670_001	Banana	cytosol	28.1	33.06
GSMUA_Achr2P08320_001	Banana	nucleus	23.65	32.27
CDY30950	Canola	nucleus	15.93	29.06
CDX83601	Canola	mitochondrion	14.29	20.89

Protein Annotations

MapMan:15.5.45	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347
GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K4C7J4	PFAM:PF06200	PFscan:PS51320
PANTHER:PTHR33077	PANTHER:PTHR33077:SF8	SMART:SM00979	EnsemblPlantsGene:Solyc06g065650.2	EnsemblPlants:Solyc06g065650.2.1	InterPro:Tify_dom
UniParc:UPI000276598B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:41054379..41061116

Molecular Weight (calculated)

44860.2 Da

IEP (calculated)

9.485

GRAVY (calculated)

-0.556

Length

427 amino acids

Sequence
(BLAST)

001: MAHIQSNKSV SGTATEADEV KPAATTFHDF LGKGYTQDSS PAMSGRVVLP SEASPSASVS LGASSGGGRG PISTTSDLGS ERVVGNHFEG VPFYGLRGEL
101: SGPETSNRLS GTKRSNSDSL MGLTRDKFAM LRPDALESSH MQKLLRNAGG ERHGRPQDQE MSFVMHPLRP LHPSLISQPS ATGRTDVNAS KWDRVIPVNV
201: GPTLQYPPRA SHVLPFGYQS SSSRFGDANA GPSNISQAAD EGSRTGIKGS GILSSINASG GISDRSLSGL PLSGAKQKST LHFSDLESSN PCRQGSSPAG
301: SQMTIFYGGQ AHVFDNVHPN KADVIMSLAG SNGGSWSTTY APKPTARPST GENYLPKAEN ETTKGNNLAL IRELHGRSSG KAGFTHGFGS GDHISIPQGI
401: NRGVSITKET KTAVQLAENV TDEKREM

Best Arabidopsis Sequence Match ( AT4G32570.2 )
(BLAST)

001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGDFFLKKT RFQQKFWLAS YKY

Arabidopsis Description

TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.