Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040086.1-P | Field mustard | nucleus | 94.94 | 94.68 |
| CDY51673 | Canola | nucleus | 94.38 | 93.85 |
| AT4G32570.1 | Thale cress | nucleus | 82.3 | 81.16 |
| CDX68863 | Canola | nucleus | 71.63 | 74.13 |
| CDX75256 | Canola | nucleus | 71.07 | 73.33 |
| CDY30950 | Canola | nucleus | 39.89 | 60.68 |
| CDX83601 | Canola | mitochondrion | 32.02 | 39.04 |
| KRH61848 | Soybean | cytosol, plastid | 40.45 | 34.7 |
| KRH52520 | Soybean | cytosol, plastid | 39.61 | 34.14 |
| VIT_04s0008g04950.t01 | Wine grape | plastid | 40.73 | 32.88 |
| Solyc06g065650.2.1 | Tomato | nucleus | 36.52 | 30.45 |
| PGSC0003DMT400067114 | Potato | nucleus | 36.24 | 30.21 |
| KRH05071 | Soybean | nucleus | 30.34 | 28.5 |
| GSMUA_Achr6P01670_001 | Banana | cytosol | 26.12 | 25.62 |
| GSMUA_Achr2P08320_001 | Banana | nucleus | 21.35 | 24.28 |
| GSMUA_AchrUn_... | Banana | cytosol | 21.91 | 23.85 |
Protein Annotations
| EnsemblPlants:CDY23332 | EnsemblPlantsGene:GSBRNA2T00021921001 | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF8 |
| PFAM:PF06200 | PFscan:PS51320 | ProteinID:CDY23332 | ProteinID:CDY23332.1 | SEG:seg | SMART:SM00979 |
| UniParc:UPI0004EF10AF | UniProt:A0A078GE32 | MapMan:35.1 | : | : | : |
Description
BnaA08g12140DBnaA08g12140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE32]
Coordinates
chrLK032142:-:564557..567122
Molecular Weight (calculated)
38390.6 Da
IEP (calculated)
8.844
GRAVY (calculated)
-0.787
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNHNNDDRT TDVDSHLCQK EQDKLLFHDF LGSKTETLAS TSMADHSLPL DKAVKLAMTS ASSVGGRGGL SSTSDLVERQ GSGGGNHLDG RQLFGPRSEV
101: SGSIMSNRFS GNKRSNSDSQ FTSQEHPETL HWSKMLRNGP GSLSMNMNHL ANQPPRGGGG QISHLLHQLS SSRFKDENVG PSVIAQTAAD EGSRTGMKGP
201: GVMSPFTMPN PSKVECFAHS STGNRKELTS SKQMTIFYGG QAHVFDDVHP NKADVIMTLA GSSGGSWSTD VSHKPKTKNN TSDGPYKLSQ MYEGGSSRET
301: PFLSSEFRAR PGHQATSGAC QRIFTQPGRE QQGSMISRGR EIRDPVHVSD PEKKAT
101: SGSIMSNRFS GNKRSNSDSQ FTSQEHPETL HWSKMLRNGP GSLSMNMNHL ANQPPRGGGG QISHLLHQLS SSRFKDENVG PSVIAQTAAD EGSRTGMKGP
201: GVMSPFTMPN PSKVECFAHS STGNRKELTS SKQMTIFYGG QAHVFDDVHP NKADVIMTLA GSSGGSWSTD VSHKPKTKNN TSDGPYKLSQ MYEGGSSRET
301: PFLSSEFRAR PGHQATSGAC QRIFTQPGRE QQGSMISRGR EIRDPVHVSD PEKKAT
001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T
Arabidopsis Description
TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.