Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040086.1-P | Field mustard | nucleus | 94.69 | 94.96 |
| CDY23332 | Canola | nucleus | 93.85 | 94.38 |
| AT4G32570.1 | Thale cress | nucleus | 80.17 | 79.5 |
| CDX68863 | Canola | nucleus | 71.23 | 74.13 |
| CDX75256 | Canola | nucleus | 70.39 | 73.04 |
| CDY30950 | Canola | nucleus | 39.66 | 60.68 |
| CDX83601 | Canola | mitochondrion | 32.12 | 39.38 |
| KRH61848 | Soybean | cytosol, plastid | 39.94 | 34.46 |
| KRH52520 | Soybean | cytosol, plastid | 39.66 | 34.38 |
| VIT_04s0008g04950.t01 | Wine grape | plastid | 40.5 | 32.88 |
| Solyc06g065650.2.1 | Tomato | nucleus | 36.03 | 30.21 |
| PGSC0003DMT400067114 | Potato | nucleus | 35.75 | 29.98 |
| KRH05071 | Soybean | nucleus | 30.73 | 29.02 |
| GSMUA_Achr6P01670_001 | Banana | cytosol | 25.98 | 25.62 |
| GSMUA_Achr2P08320_001 | Banana | nucleus | 21.51 | 24.6 |
| GSMUA_AchrUn_... | Banana | cytosol | 21.51 | 23.55 |
Protein Annotations
| EnsemblPlants:CDY51673 | EnsemblPlantsGene:GSBRNA2T00004006001 | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF8 |
| PFAM:PF06200 | PFscan:PS51320 | ProteinID:CDY51673 | ProteinID:CDY51673.1 | SEG:seg | SMART:SM00979 |
| UniParc:UPI0004EDB538 | UniProt:A0A078IRF4 | MapMan:15.5.45 | : | : | : |
Description
BnaC03g67120DBnaC03g67120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRF4]
Coordinates
chrLK033017:+:78414..80834
Molecular Weight (calculated)
38784.0 Da
IEP (calculated)
9.166
GRAVY (calculated)
-0.836
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNHNNDDRT TDVDSHLRQK EQDKLLFHDF LGSKTETLAS TSMADHSLAL DKAVKLAMTS ASSVGRRGGL SSTSDLVERQ GSGGGNHLDG RQLFGPRSEV
101: SGSIMSNRFS GTKRSNSDSQ FTSQEHPETL HWSKMLRNGP GSLSMNMNHM ANQPPRGGGG QISHLLHQLS SSRFKDENAG PSVIAQTAAD EGSRTGMKGP
201: GVTSPFTMPN PSRVECFAPS SNRNRKELTS STKQMTIFYG GQAHVFDDVH PNKADVIMTL AGSSGGSWST DLSHIPKTKN NTSDGPDKLS QMYEGGSSRE
301: TPFLSSEFRA RPGHQATSSA CQRIFTQPGR EHQGGIISRG REIRDPVHVS DPEKKPHD
101: SGSIMSNRFS GTKRSNSDSQ FTSQEHPETL HWSKMLRNGP GSLSMNMNHM ANQPPRGGGG QISHLLHQLS SSRFKDENAG PSVIAQTAAD EGSRTGMKGP
201: GVTSPFTMPN PSRVECFAPS SNRNRKELTS STKQMTIFYG GQAHVFDDVH PNKADVIMTL AGSSGGSWST DLSHIPKTKN NTSDGPDKLS QMYEGGSSRE
301: TPFLSSEFRA RPGHQATSSA CQRIFTQPGR EHQGGIISRG REIRDPVHVS DPEKKPHD
001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T
Arabidopsis Description
TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.