CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68566
CDX78368
CDX81159
CDX84395
CDX89500
CDY02098
CDY04768
CDY08765
CDY21400
CDY23023
CDY25618
CDY25761
CDY30608
CDY37838
CDY41513
CDY45614
CDY48138
CDY52535
CDY57355

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03000.1	CDY04768	AT1G22920.1	21798944
AT3G03000.1	CDY21400	AT1G22920.1	21798944
AT3G03000.1	CDY25761	AT1G22920.1	21798944
AT3G03000.1	CDX89500	AT2G22680.1	21798944
AT3G03000.1	CDY25618	AT2G22680.1	21798944
AT3G03000.1	CDX68566	AT3G50060.1	21798944
AT3G03000.1	CDY02098	AT3G50060.1	21798944
AT3G03000.1	CDY23023	AT3G50060.1	21798944
AT3G03000.1	CDY30608	AT3G50060.1	21798944
AT3G03000.1	CDY57355	AT3G50060.1	21798944
AT3G03000.1	CDX78368	AT5G10110.1	21798944
AT3G03000.1	CDX81159	AT5G10110.1	21798944
AT3G03000.1	CDX84395	AT5G63310.1	21798944
AT3G03000.1	CDY41513	AT5G63310.1	21798944
AT3G03000.1	CDY48138	AT5G63310.1	21798944
AT3G03000.1	CDY08765	AT5G65683.1	21798944
AT3G03000.1	CDY37838	AT5G65683.1	21798944
AT3G03000.1	CDY45614	AT5G65683.1	21798944
AT3G03000.1	CDY52535	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021379.1-P	Field mustard	cytosol	100.0	100.0
AT3G03000.1	Thale cress	cytosol	89.94	92.12
VIT_16s0039g01880.t01	Wine grape	cytosol	76.92	79.75
PGSC0003DMT400038352	Potato	cytosol	75.74	78.53
Solyc03g097100.1.1	Tomato	cytosol	75.15	77.91
KRH25249	Soybean	cytosol	70.41	73.01
KRH30413	Soybean	cytosol	68.64	72.96
CDY54677	Canola	cytosol	63.91	65.06
CDY61824	Canola	cytosol	63.91	65.06
CDX81878	Canola	cytosol	46.75	50.64
CDY21702	Canola	cytosol	46.75	50.64
CDY19221	Canola	cytosol	46.75	50.32
CDY26151	Canola	cytosol	46.75	50.32
CDY04172	Canola	cytosol	46.15	48.45
CDY48076	Canola	cytosol	46.15	48.15
CDY51605	Canola	cytosol	46.15	48.15
CDY59874	Canola	cytosol	45.56	47.83
CDX96148	Canola	cytosol	39.65	44.97
CDY55678	Canola	cytosol	39.65	44.97
CDY12321	Canola	cytosol	38.46	44.83
CDX92401	Canola	cytosol	35.5	44.78
CDY56411	Canola	cytosol	39.05	44.3
CDY65072	Canola	cytosol	39.05	44.3
CDY04474	Canola	cytosol	39.05	44.3
CDY27651	Canola	cytosol	39.05	44.0
CDX99690	Canola	cytosol	38.46	43.62
CDX92965	Canola	cytosol	38.46	42.21
CDY34215	Canola	cytosol	37.87	41.03
CDY10686	Canola	cytosol	37.28	40.65
CDY06478	Canola	cytosol	35.5	39.74
CDY10325	Canola	cytosol	25.44	38.05
CDX94883	Canola	cytosol	24.85	37.84
CDX75970	Canola	cytosol	25.44	37.72
CDY48191	Canola	cytosol	39.65	37.43
CDX77060	Canola	cytosol	39.65	37.22
CDY40824	Canola	cytosol	37.87	35.56
CDY57144	Canola	cytosol	28.4	32.88
CDY26556	Canola	cytosol	28.4	32.43
CDY21044	Canola	cytosol	28.4	32.43
CDY15991	Canola	cytosol	28.4	32.43
CDY31259	Canola	cytosol	27.81	31.76
CDY30070	Canola	cytosol	27.81	31.76
CDX98074	Canola	cytosol	27.81	31.76
CDY30947	Canola	cytosol	39.05	31.58
CDX75623	Canola	extracellular	31.36	29.44
CDY21220	Canola	cytosol	38.46	29.41
CDX83123	Canola	golgi	26.63	23.56
CDY62753	Canola	cytosol	27.22	23.0

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078J5Z9	UniProt:A0A078J5Z9	EnsemblPlants:CDY58544	ProteinID:CDY58544
ProteinID:CDY58544.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0000325	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0006810	GO:GO:0008150	GO:GO:0043269	EnsemblPlantsGene:GSBRNA2T00024830001	InterPro:IPR002048
PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR44256	PANTHER:PTHR44256:SF1	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0002544CD0	SEG:seg	:	:	:

Description

BnaAnng15200DProbable calcium-binding protein CML18 [Source:Projected from Arabidopsis thaliana (AT3G03000) UniProtKB/Swiss-Prot;Acc:Q9M8U1]

Coordinates

chrLK033678:-:5000..5509

Molecular Weight (calculated)

18652.8 Da

IEP (calculated)

4.222

GRAVY (calculated)

-0.453

Length

169 amino acids

Sequence
(BLAST)

001: MSRDDGDKPS PAPGKKLGDE QLAELREIFR SYDQNNDGSL TELELAALLR SLGLKPSQDQ LDTLIHKADR NNNGIIEFSE FVALVEPDLV KCPYTEDQLK
101: AIFKMFDRDG NGYITAAELA HSMAKLGHAL TAEELTGMIR EADRDGDGCI DFQEFVQAIT SAAFDNAWG

Best Arabidopsis Sequence Match ( AT3G03000.1 )
(BLAST)

001: MSCDGGKPAP AKLGDEQLAE LREIFRSFDQ NKDGSLTELE LGSLLRSLGL KPSQDQLDTL IQKADRNNNG LVEFSEFVAL VEPDLVKCPY TDDQLKAIFR
101: MFDRDGNGYI TAAELAHSMA KLGHALTAEE LTGMIKEADR DGDGCIDFQE FVQAITSAAF DNAWG

Arabidopsis Description

CML18Probable calcium-binding protein CML18 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.