Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12310.1 | CDX86928 | AT5G62070.1 | 21798944 |
| AT1G12310.1 | CDY00251 | AT5G62070.1 | 21798944 |
| AT1G12310.1 | CDY00253 | AT5G62070.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30070 | Canola | cytosol | 100.0 | 100.0 |
| Bra019756.1-P | Field mustard | cytosol | 98.65 | 98.65 |
| AT1G12310.1 | Thale cress | cytosol | 97.3 | 97.3 |
| CDY21044 | Canola | cytosol | 95.95 | 95.95 |
| CDY26556 | Canola | cytosol | 95.95 | 95.95 |
| CDY31259 | Canola | cytosol | 95.95 | 95.95 |
| CDY15991 | Canola | cytosol | 95.27 | 95.27 |
| AT1G62820.1 | Thale cress | cytosol | 91.89 | 91.89 |
| KRH77406 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 87.16 | 87.76 |
| KRH28027 | Soybean | cytosol, endoplasmic reticulum, nucleus | 87.16 | 87.76 |
| VIT_02s0241g00140.t01 | Wine grape | cytosol | 87.16 | 87.76 |
| PGSC0003DMT400070433 | Potato | cytosol | 86.49 | 87.07 |
| Solyc03g083520.2.1 | Tomato | cytosol, nucleus | 85.81 | 84.67 |
| Solyc11g072270.1.1 | Tomato | cytosol | 86.49 | 82.05 |
| Zm00001d035095_P001 | Maize | cytosol, extracellular, mitochondrion | 77.03 | 77.03 |
| TraesCS7A01G316100.1 | Wheat | cytosol, unclear | 76.35 | 76.35 |
| OQU79799 | Sorghum | cytosol | 76.35 | 76.35 |
| GSMUA_Achr3P26750_001 | Banana | cytosol, plasma membrane | 76.35 | 76.35 |
| Os08t0117400-01 | Rice | plasma membrane | 75.68 | 75.68 |
| TraesCS7B01G217200.1 | Wheat | cytosol, plastid | 75.68 | 75.68 |
| TraesCS7D01G313100.1 | Wheat | cytosol | 75.0 | 75.0 |
| Zm00001d049665_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 74.32 | 74.32 |
| KRH04023 | Soybean | cytosol | 72.97 | 73.47 |
| HORVU7Hr1G075240.1 | Barley | cytosol, plastid | 75.68 | 57.44 |
| CDY65072 | Canola | cytosol | 49.32 | 48.99 |
| CDY55678 | Canola | cytosol | 48.65 | 48.32 |
| CDX92401 | Canola | cytosol | 43.24 | 47.76 |
| CDY56411 | Canola | cytosol | 47.97 | 47.65 |
| CDX96148 | Canola | cytosol | 47.97 | 47.65 |
| CDY04474 | Canola | cytosol | 47.97 | 47.65 |
| CDX99690 | Canola | cytosol | 47.3 | 46.98 |
| CDY12321 | Canola | cytosol | 45.95 | 46.9 |
| CDY27651 | Canola | cytosol | 47.3 | 46.67 |
| CDY48191 | Canola | cytosol | 49.32 | 40.78 |
| CDX77060 | Canola | cytosol | 49.32 | 40.56 |
| CDX92965 | Canola | cytosol | 39.19 | 37.66 |
| CDY10686 | Canola | cytosol | 38.51 | 36.77 |
| CDX94883 | Canola | cytosol | 27.03 | 36.04 |
| CDY34215 | Canola | cytosol | 37.84 | 35.9 |
| CDY06478 | Canola | cytosol | 36.49 | 35.76 |
| CDY57144 | Canola | cytosol | 33.78 | 34.25 |
| CDX75970 | Canola | cytosol | 26.35 | 34.21 |
| CDY10325 | Canola | cytosol | 25.68 | 33.63 |
| CDY30947 | Canola | cytosol | 47.3 | 33.49 |
| CDY21220 | Canola | cytosol | 46.62 | 31.22 |
| CDY40824 | Canola | cytosol | 37.84 | 31.11 |
| CDY58544 | Canola | cytosol | 31.76 | 27.81 |
| CDY26151 | Canola | cytosol | 29.05 | 27.39 |
| CDX81878 | Canola | cytosol | 28.38 | 26.92 |
| CDY19221 | Canola | cytosol | 28.38 | 26.75 |
| CDY21702 | Canola | cytosol | 27.7 | 26.28 |
| CDX75623 | Canola | extracellular | 31.76 | 26.11 |
| CDY61824 | Canola | cytosol | 29.05 | 25.9 |
| CDY54677 | Canola | cytosol | 29.05 | 25.9 |
| CDY04172 | Canola | cytosol | 25.68 | 23.6 |
| CDY59874 | Canola | cytosol | 25.68 | 23.6 |
| CDY51605 | Canola | cytosol | 25.68 | 23.46 |
| CDY48076 | Canola | cytosol | 25.68 | 23.46 |
| CDX83123 | Canola | golgi | 29.05 | 22.51 |
| CDY62753 | Canola | cytosol | 29.73 | 22.0 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | GO:A0A078EBD9 | UniProt:A0A078EBD9 | EnsemblPlants:CDX98074 | ProteinID:CDX98074 |
| ProteinID:CDX98074.1 | ProteinID:CDY30070.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | EnsemblPlantsGene:GSBRNA2T00105453001 | InterPro:IPR002048 | PFAM:PF13405 | PFAM:PF13499 |
| ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF214 | SMART:SM00054 | SUPFAM:SSF47473 |
| UniParc:UPI0004EBE1F5 | : | : | : | : | : |
Description
BnaA06g08250DBnaA06g08250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EBD9]
Coordinates
chrLK031902:+:860630..861076
Molecular Weight (calculated)
16476.6 Da
IEP (calculated)
4.539
GRAVY (calculated)
-0.338
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSITASESLT APFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
Arabidopsis Description
CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.