Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g026110.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12310.1 | Solyc03g026110.2.1 | AT5G62070.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070433 | Potato | cytosol | 92.95 | 98.64 |
| Solyc03g083520.2.1 | Tomato | cytosol, nucleus | 87.82 | 91.33 |
| AT1G12310.1 | Thale cress | cytosol | 82.69 | 87.16 |
| CDX98074 | Canola | cytosol | 82.05 | 86.49 |
| CDY21044 | Canola | cytosol | 82.05 | 86.49 |
| CDY30070 | Canola | cytosol | 82.05 | 86.49 |
| CDY31259 | Canola | cytosol | 82.05 | 86.49 |
| KRH77406 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 80.77 | 85.71 |
| AT1G62820.1 | Thale cress | cytosol | 80.77 | 85.14 |
| Bra019756.1-P | Field mustard | cytosol | 80.77 | 85.14 |
| KRH28027 | Soybean | cytosol, endoplasmic reticulum, nucleus | 80.13 | 85.03 |
| CDY26556 | Canola | cytosol | 80.13 | 84.46 |
| Bra026976.1-P | Field mustard | cytosol | 80.13 | 84.46 |
| VIT_02s0241g00140.t01 | Wine grape | cytosol | 79.49 | 84.35 |
| CDY15991 | Canola | cytosol | 79.49 | 83.78 |
| OQU79799 | Sorghum | cytosol | 72.44 | 76.35 |
| Zm00001d035095_P001 | Maize | cytosol, extracellular, mitochondrion | 71.15 | 75.0 |
| TraesCS7D01G313100.1 | Wheat | cytosol | 70.51 | 74.32 |
| Zm00001d049665_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 69.87 | 73.65 |
| TraesCS7B01G217200.1 | Wheat | cytosol, plastid | 69.87 | 73.65 |
| TraesCS7A01G316100.1 | Wheat | cytosol, unclear | 69.87 | 73.65 |
| Os08t0117400-01 | Rice | plasma membrane | 69.23 | 72.97 |
| GSMUA_Achr3P26750_001 | Banana | cytosol, plasma membrane | 67.95 | 71.62 |
| KRH04023 | Soybean | cytosol | 66.03 | 70.07 |
| HORVU7Hr1G075240.1 | Barley | cytosol, plastid | 69.23 | 55.38 |
| Solyc10g081170.1.1 | Tomato | extracellular | 46.15 | 48.32 |
| Solyc10g077010.1.1 | Tomato | cytosol | 45.51 | 47.65 |
| Solyc11g072240.1.1 | Tomato | cytosol | 45.51 | 47.65 |
| Solyc12g099990.1.1 | Tomato | nucleus | 45.51 | 47.65 |
| Solyc01g008950.2.1 | Tomato | nucleus | 45.51 | 47.65 |
| Solyc03g098050.2.1 | Tomato | nucleus | 44.23 | 46.31 |
| Solyc06g053930.2.1 | Tomato | cytosol | 37.82 | 39.6 |
| Solyc01g105630.2.1 | Tomato | cytosol | 33.97 | 36.05 |
| Solyc03g005240.1.1 | Tomato | cytosol | 33.97 | 34.64 |
| Solyc03g097100.1.1 | Tomato | cytosol | 32.05 | 30.67 |
| Solyc02g090810.2.1 | Tomato | cytosol, mitochondrion | 31.41 | 29.17 |
| Solyc04g026350.2.1 | Tomato | cytosol | 29.49 | 26.59 |
| Solyc03g114420.1.1 | Tomato | cytosol | 26.92 | 24.56 |
| Solyc01g010020.2.1 | Tomato | cytosol | 25.0 | 24.22 |
Protein Annotations
| EnsemblPlants:Solyc11g072270.1.1 | EnsemblPlantsGene:Solyc11g072270.1 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF214 |
| PFAM:PF13405 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 |
| UniParc:UPI0002769B20 | UniProt:K4DAT4 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr11:-:55471599..55474186
Molecular Weight (calculated)
17632.1 Da
IEP (calculated)
4.645
GRAVY (calculated)
-0.319
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKDLSNDQI SSMKEAFTLF DTDGDGKISP SELGILMRSL GGNPTQAQLK SIIAEEKLTS PFDFNRFMEL MSKHLKPEPF DRQLRDAFKV LDKDGTGFVV
101: VSDLKHILTS IGEKLEPSEF DEWIREVDAG SDGKIRYEDF IARMVAKIFI FGYITQ
101: VSDLKHILTS IGEKLEPSEF DEWIREVDAG SDGKIRYEDF IARMVAKIFI FGYITQ
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
Arabidopsis Description
CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.