Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 1
- mitochondrion 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g054910.2.1 | |
| Solyc12g035670.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50360.1 | Solyc05g054910.2.1 | AT2G39340.1 | 19843313 |
| AT3G50360.1 | Solyc12g035670.1.1 | AT3G06290.1 | 19843313 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 99.4 | 99.4 |
| AT3G50360.1 | Thale cress | cytosol | 76.79 | 76.33 |
| Solyc04g026350.2.1 | Tomato | cytosol | 76.19 | 73.99 |
| KRH10567 | Soybean | endoplasmic reticulum | 73.21 | 72.35 |
| TraesCS2A01G166500.1 | Wheat | cytosol, mitochondrion | 72.02 | 72.02 |
| TraesCS2B01G192400.1 | Wheat | cytosol, mitochondrion | 72.02 | 72.02 |
| TraesCS2D01G173900.1 | Wheat | cytosol, mitochondrion | 72.02 | 72.02 |
| HORVU2Hr1G030640.1 | Barley | cytosol | 72.02 | 71.6 |
| VIT_05s0094g01240.t01 | Wine grape | cytosol | 69.05 | 70.3 |
| Zm00001d022160_P003 | Maize | cytosol, mitochondrion | 70.24 | 68.6 |
| KRH43884 | Soybean | cytosol | 51.79 | 66.41 |
| GSMUA_Achr6P10140_001 | Banana | cytosol | 64.29 | 66.26 |
| CDX83123 | Canola | golgi | 75.0 | 65.97 |
| CDY62753 | Canola | cytosol | 76.19 | 64.0 |
| KXG36700 | Sorghum | cytosol | 65.48 | 63.95 |
| KRG98826 | Soybean | cytosol | 58.93 | 63.06 |
| KRG98823 | Soybean | cytosol | 57.74 | 61.78 |
| Zm00001d014271_P001 | Maize | cytosol | 64.88 | 60.89 |
| CDX75623 | Canola | extracellular | 64.88 | 60.56 |
| TraesCS7B01G412100.1 | Wheat | cytosol | 64.88 | 60.22 |
| HORVU7Hr1G113200.1 | Barley | cytosol | 64.88 | 60.22 |
| AT4G37010.2 | Thale cress | cytosol, mitochondrion | 60.71 | 59.65 |
| VIT_07s0031g00700.t01 | Wine grape | cytosol | 71.43 | 59.41 |
| Os10t0389000-01 | Rice | plasma membrane | 65.48 | 57.59 |
| Os07t0618800-01 | Rice | plasma membrane | 70.24 | 56.46 |
| Solyc03g098050.2.1 | Tomato | nucleus | 41.67 | 46.98 |
| Solyc10g081170.1.1 | Tomato | extracellular | 39.88 | 44.97 |
| Solyc12g099990.1.1 | Tomato | nucleus | 39.29 | 44.3 |
| Solyc01g008950.2.1 | Tomato | nucleus | 39.29 | 44.3 |
| Solyc11g072240.1.1 | Tomato | cytosol | 39.29 | 44.3 |
| Solyc10g077010.1.1 | Tomato | cytosol | 39.29 | 44.3 |
| Solyc06g053930.2.1 | Tomato | cytosol | 36.31 | 40.94 |
| Solyc03g005240.1.1 | Tomato | cytosol | 35.71 | 39.22 |
| Solyc01g105630.2.1 | Tomato | cytosol | 33.33 | 38.1 |
| Solyc03g083520.2.1 | Tomato | cytosol, nucleus | 30.95 | 34.67 |
| Solyc11g072270.1.1 | Tomato | cytosol | 29.17 | 31.41 |
| Solyc03g097100.1.1 | Tomato | cytosol | 29.76 | 30.67 |
| Solyc01g010020.2.1 | Tomato | cytosol | 27.98 | 29.19 |
| Solyc03g114420.1.1 | Tomato | cytosol | 26.79 | 26.32 |
Protein Annotations
| EnsemblPlants:Solyc02g090810.2.1 | EnsemblPlantsGene:Solyc02g090810.2 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF167 |
| PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI00027675FA |
| UniProt:K4BCN0 | MapMan:14.6.1.1 | MapMan:16.11.2.3 | : | : | : |
Description
No Description!
Coordinates
chr2:-:52298522..52300624
Molecular Weight (calculated)
18965.3 Da
IEP (calculated)
4.438
GRAVY (calculated)
-0.741
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVSRKMSR KETRNRHPGL TQQKRQEIKE AFELFDTDGS GTIDASELNV AMRALGFEMT EEQVEQMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKED
101: LAKAFNILDQ DKNGKISAAD IQQIAKELGE NFSAKEIQEM IEAADRDRDG EVSAEEFMRM MRKTSFAN
101: LAKAFNILDQ DKNGKISAAD IQQIAKELGE NFSAKEIQEM IEAADRDRDG EVSAEEFMRM MRKTSFAN
001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
Arabidopsis Description
CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.