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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG92986
KRH11322
KRH20952
KRH36229

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G50360.1 KRG92986 AT2G39340.1 19843313
AT3G50360.1 KRH36229 AT2G39340.1 19843313
AT3G50360.1 KRH11322 AT3G06290.1 19843313
AT3G50360.1 KRH20952 AT3G06290.1 19843313
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH43884 Soybean cytosol 73.53 95.42
KRG98826 Soybean cytosol 75.29 81.53
KRG98823 Soybean cytosol 74.12 80.25
AT3G50360.1 Thale cress cytosol 78.24 78.7
VIT_05s0094g01240.t01 Wine grape cytosol 73.53 75.76
TraesCS2D01G173900.1 Wheat cytosol, mitochondrion 74.12 75.0
TraesCS2B01G192400.1 Wheat cytosol, mitochondrion 74.12 75.0
TraesCS2A01G166500.1 Wheat cytosol, mitochondrion 74.12 75.0
Solyc04g026350.2.1 Tomato cytosol 75.88 74.57
HORVU2Hr1G030640.1 Barley cytosol 74.12 74.56
Solyc02g090810.2.1 Tomato cytosol, mitochondrion 72.35 73.21
PGSC0003DMT400010295 Potato cytosol, mitochondrion 72.35 73.21
Zm00001d022160_P003 Maize cytosol, mitochondrion 72.35 71.51
CDX83123 Canola golgi 77.65 69.11
KXG36700 Sorghum cytosol 68.24 67.44
CDY62753 Canola cytosol 77.65 66.0
GSMUA_Achr6P10140_001 Banana cytosol 60.59 63.19
CDX75623 Canola extracellular 64.12 60.56
VIT_07s0031g00700.t01 Wine grape cytosol 71.76 60.4
Os07t0618800-01 Rice plasma membrane 74.12 60.29
AT4G37010.2 Thale cress cytosol, mitochondrion 60.59 60.23
Zm00001d014271_P001 Maize cytosol 61.76 58.66
HORVU7Hr1G113200.1 Barley cytosol 62.35 58.56
TraesCS7B01G412100.1 Wheat cytosol 62.35 58.56
Os10t0389000-01 Rice plasma membrane 63.53 56.54
KRG94975 Soybean nucleus 38.82 44.3
KRH69070 Soybean cytosol 37.65 42.67
KRH31638 Soybean cytosol 37.06 42.0
KRH67274 Soybean cytosol 36.47 41.89
KRH34350 Soybean cytosol 36.47 41.33
KRG95596 Soybean cytosol 35.88 41.22
KRG92449 Soybean cytosol 35.88 40.67
KRH68729 Soybean cytosol 34.71 39.6
KRG96966 Soybean cytosol 34.12 38.93
KRH18664 Soybean cytosol 31.76 38.57
KRH34082 Soybean cytosol 31.76 36.24
KRH71363 Soybean cytosol 31.18 35.57
KRG92667 Soybean cytosol 31.18 35.57
KRG89812 Soybean cytosol, mitochondrion 33.53 34.55
KRH32074 Soybean cytosol 30.0 34.23
KRG94637 Soybean cytosol 22.94 34.21
KRH77406 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 25.88 29.93
KRH56721 Soybean cytosol 28.24 29.81
KRH04023 Soybean cytosol 25.29 29.25
KRH28027 Soybean cytosol, endoplasmic reticulum, nucleus 25.29 29.25
KRH62961 Soybean cytosol 26.47 28.12
KRH54782 Soybean cytosol 25.88 27.5
KRH07628 Soybean cytosol 25.29 26.88
KRH30413 Soybean cytosol 24.12 25.79
KRH25249 Soybean cytosol 24.12 25.15
Protein Annotations
Gene3D:1.10.238.10EntrezGene:100794671MapMan:14.6.1.1MapMan:16.11.2.3UniProt:A0A0R0FXE6EMBL:ACUP02009148
InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domEnsemblPlantsGene:GLYMA_15G055100GO:GO:0003674GO:GO:0005488
GO:GO:0005509InterPro:IPR002048EnsemblPlants:KRH10567ProteinID:KRH10567ProteinID:KRH10567.1PFAM:PF13499
ScanProsite:PS00018PFscan:PS50222PANTHER:PTHR23050PANTHER:PTHR23050:SF167SMART:SM00054SUPFAM:SSF47473
UniParc:UPI0001817FAF:::::
Description
hypothetical protein
Coordinates
chr15:+:4326815..4329488
Molecular Weight (calculated)
19792.2 Da
IEP (calculated)
4.659
GRAVY (calculated)
-0.946
Length
170 amino acids
Sequence
(BLAST)
001: MSSLYRGESR RYNNKPRGRH NLTTQKKQEI KEAFELFDTD GSGTIDAKEL NVAMRALGFE MTEEQINQMI ADVDKDGSGA IDYEEFEYMM TAKIGERDTK
101: EELMKAFHII DHDKNGKISA LDIKRIAKEL GQNFTDREIQ EMVEEADQDN DREVSAEEFI TMMNRTRFHH
Best Arabidopsis Sequence Match ( AT3G50360.1 )
(BLAST)
001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
Arabidopsis Description
CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.