Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_05s0020g02350.t01 | |
| VIT_13s0067g03680.t01 | |
| VIT_13s0067g03720.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50360.1 | VIT_13s0067g03680.t01 | AT2G39340.1 | 19843313 |
| AT3G50360.1 | VIT_13s0067g03720.t01 | AT2G39340.1 | 19843313 |
| AT3G50360.1 | VIT_05s0020g02350.t01 | AT3G06290.1 | 19843313 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0094g01240.t01 | Wine grape | cytosol | 62.38 | 76.36 |
| AT3G50360.1 | Thale cress | cytosol | 60.4 | 72.19 |
| KRH10567 | Soybean | endoplasmic reticulum | 60.4 | 71.76 |
| Solyc02g090810.2.1 | Tomato | cytosol, mitochondrion | 59.41 | 71.43 |
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 59.41 | 71.43 |
| Solyc04g026350.2.1 | Tomato | cytosol | 60.89 | 71.1 |
| TraesCS2D01G173900.1 | Wheat | cytosol, mitochondrion | 58.91 | 70.83 |
| TraesCS2B01G192400.1 | Wheat | cytosol, mitochondrion | 58.91 | 70.83 |
| TraesCS2A01G166500.1 | Wheat | cytosol, mitochondrion | 58.91 | 70.83 |
| HORVU2Hr1G030640.1 | Barley | cytosol | 58.91 | 70.41 |
| GSMUA_Achr6P10140_001 | Banana | cytosol | 54.46 | 67.48 |
| Zm00001d022160_P003 | Maize | cytosol, mitochondrion | 56.93 | 66.86 |
| KRH43884 | Soybean | cytosol | 43.07 | 66.41 |
| CDX83123 | Canola | golgi | 62.38 | 65.97 |
| CDY62753 | Canola | cytosol | 63.37 | 64.0 |
| AT4G37010.2 | Thale cress | cytosol, mitochondrion | 53.47 | 63.16 |
| KRG98826 | Soybean | cytosol | 49.01 | 63.06 |
| CDX75623 | Canola | extracellular | 55.94 | 62.78 |
| KRG98823 | Soybean | cytosol | 48.51 | 62.42 |
| KXG36700 | Sorghum | cytosol | 52.97 | 62.21 |
| Zm00001d014271_P001 | Maize | cytosol | 54.95 | 62.01 |
| TraesCS7B01G412100.1 | Wheat | cytosol | 54.95 | 61.33 |
| HORVU7Hr1G113200.1 | Barley | cytosol | 53.96 | 60.22 |
| Os07t0618800-01 | Rice | plasma membrane | 59.9 | 57.89 |
| Os10t0389000-01 | Rice | plasma membrane | 53.47 | 56.54 |
| VIT_17s0000g00580.t01 | Wine grape | cytosol | 34.65 | 46.98 |
| VIT_08s0040g00470.t01 | Wine grape | cytosol | 34.16 | 46.31 |
| VIT_05s0020g04420.t01 | Wine grape | cytosol | 33.66 | 45.64 |
| VIT_06s0009g01910.t01 | Wine grape | cytosol | 34.16 | 45.1 |
| VIT_14s0030g02150.t01 | Wine grape | cytosol | 32.67 | 43.14 |
| VIT_00s0179g00280.t01 | Wine grape | cytosol | 29.21 | 39.6 |
| VIT_02s0241g00140.t01 | Wine grape | cytosol | 24.26 | 33.33 |
| VIT_02s0012g02060.t01 | Wine grape | cytosol | 23.76 | 29.45 |
| VIT_01s0011g02470.t01 | Wine grape | cytosol | 22.77 | 28.4 |
| VIT_17s0000g04460.t01 | Wine grape | cytosol | 21.78 | 27.5 |
| VIT_16s0039g01880.t01 | Wine grape | cytosol | 21.29 | 26.38 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:100255889 | wikigene:100255889 | MapMan:14.6.1.1 | MapMan:16.11.2.3 | ProteinID:CCB47071 |
| ProteinID:CCB47071.1 | InterPro:Calflagin-bd | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | UniProt:F6H4K7 |
| EMBL:FN595233 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 | EntrezGene:LOC100255889 |
| wikigene:LOC100255889 | PFAM:PF13499 | PRINTS:PR01362 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR23050 |
| PANTHER:PTHR23050:SF167 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI00021089E7 | ArrayExpress:VIT_07s0031g00700 | EnsemblPlantsGene:VIT_07s0031g00700 |
| EnsemblPlants:VIT_07s0031g00700.t01 | unigene:Vvi.18534 | unigene:Vvi.18846 | RefSeq:XP_002282351 | RefSeq:XP_002282351.1 | RefSeq:XP_002282351.2 |
Description
No Description!
Coordinates
chr7:+:16861134..16865743
Molecular Weight (calculated)
23400.8 Da
IEP (calculated)
5.283
GRAVY (calculated)
-0.948
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MRECVSSKKF KKLNWGSGSY FNRKKEEIDC IMNRQKSMYG EKSRKDKPKG RHGLPQRKRQ EIKEAFDLFD TDGSGTIDAR ELNVAMRALG FEMTEEQITQ
101: MIADVDKNGS GAIDFDEFAH MMAAKIGERD SKEELMKAFH IIDQDQNGKI SSMDIKRITE ELGEKFSTRE IEEMIREADQ DSDGEVSAEE FMRMMKRTTY
201: GY
101: MIADVDKNGS GAIDFDEFAH MMAAKIGERD SKEELMKAFH IIDQDQNGKI SSMDIKRITE ELGEKFSTRE IEEMIREADQ DSDGEVSAEE FMRMMKRTTY
201: GY
001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
Arabidopsis Description
CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.