Factsheet for VIT_17s0000g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083971	Potato	extracellular	98.66	98.66
Solyc03g098050.2.1	Tomato	nucleus	98.66	98.66
VIT_08s0040g00470.t01	Wine grape	cytosol	93.29	93.29
VIT_06s0009g01910.t01	Wine grape	cytosol	93.29	90.85
VIT_05s0020g04420.t01	Wine grape	cytosol	79.19	79.19
EER90981	Sorghum	cytosol	71.81	71.81
VIT_14s0030g02150.t01	Wine grape	cytosol	73.15	71.24
VIT_00s0179g00280.t01	Wine grape	cytosol	66.44	66.44
VIT_02s0241g00140.t01	Wine grape	cytosol	48.99	49.66
VIT_05s0094g01240.t01	Wine grape	cytosol	48.32	43.64
VIT_02s0012g02060.t01	Wine grape	cytosol	46.98	42.94
VIT_16s0039g01880.t01	Wine grape	cytosol	43.62	39.88
VIT_07s0031g00700.t01	Wine grape	cytosol	46.98	34.65
VIT_01s0011g02470.t01	Wine grape	cytosol	36.91	33.95
VIT_17s0000g04460.t01	Wine grape	cytosol	34.23	31.88

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100260795	wikigene:100260795	MapMan:35.1	UniProt:A5BNP0	EMBL:AM465869
ProteinID:CAN72522	ProteinID:CAN72522.1	ProteinID:CBI38257	ProteinID:CBI38257.3	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	EMBL:FN596517	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048
EntrezGene:LOC100260795	wikigene:LOC100260795	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23050
PANTHER:PTHR23050:SF319	SMART:SM00054	SUPFAM:SSF47473	TIGR:TC52447	UniParc:UPI00015217DD	ArrayExpress:VIT_17s0000g00580
EnsemblPlantsGene:VIT_17s0000g00580	EnsemblPlants:VIT_17s0000g00580.t01	unigene:Vvi.14705	unigene:Vvi.25360	RefSeq:XP_002263538	RefSeq:XP_002263538.1
RefSeq:XP_003634912	RefSeq:XP_003634912.1	RefSeq:XP_010645766.1	:	:	:

Description

No Description!

Coordinates

chr17_random:-:372549..379920

Molecular Weight (calculated)

16945.8 Da

IEP (calculated)

3.892

GRAVY (calculated)

-0.628

Length

149 amino acids

Sequence
(BLAST)

001: MAEQLTEEQI AEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADQ NGTIDFPEFL NLMARKMKDT DSEEELKEAF KVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQVNYE EFVRMMLAK

Best Arabidopsis Sequence Match ( AT3G43810.1 )
(BLAST)

001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMAK

Arabidopsis Description

CAM7Calmodulin 7 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.