Factsheet for PGSC0003DMT400083971

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098050.2.1	Tomato	nucleus	100.0	100.0
VIT_17s0000g00580.t01	Wine grape	cytosol	98.66	98.66
PGSC0003DMT400058435	Potato	cytosol	91.95	91.95
PGSC0003DMT400070437	Potato	cytosol	91.28	91.28
PGSC0003DMT400018569	Potato	cytosol	91.28	91.28
PGSC0003DMT400046278	Potato	cytosol	46.98	90.91
PGSC0003DMT400054299	Potato	cytosol	67.79	89.38
PGSC0003DMT400014123	Potato	mitochondrion	65.77	80.33
PGSC0003DMT400042062	Potato	cytosol	77.18	76.67
EER90981	Sorghum	cytosol	71.81	71.81
PGSC0003DMT400097662	Potato	cytosol, mitochondrion	80.54	69.36
PGSC0003DMT400034833	Potato	cytosol	69.8	67.97
PGSC0003DMT400083727	Potato	cytosol	60.4	61.22
PGSC0003DMT400070433	Potato	cytosol	46.31	46.94
PGSC0003DMT400008152	Potato	cytosol	47.65	43.56
PGSC0003DMT400038352	Potato	cytosol	46.98	42.94
PGSC0003DMT400010295	Potato	cytosol, mitochondrion	46.98	41.67
PGSC0003DMT400041342	Potato	cytosol, mitochondrion	36.24	33.54
PGSC0003DMT400063261	Potato	cytosol	33.56	31.06
PGSC0003DMT400019291	Potato	cytosol	23.49	30.17

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	ProteinID:AAA74405	ProteinID:AAA74405.1	ProteinID:ACR15761	ProteinID:ACR15761.1
ProteinID:ACX85428	ProteinID:ACX85428.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EMBL:FJ943935
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0046872	EMBL:GU014578
InterPro:IPR002048	EMBL:J04559	UniProt:M1D7F9	PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG400033685	PGSC:PGSC0003DMG400033685
EnsemblPlants:PGSC0003DMT400083971	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23050	PANTHER:PTHR23050:SF319	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0000000326	:	:	:	:

Description

Calmodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400033685]

Coordinates

chr3:-:45231608..45235257

Molecular Weight (calculated)

16932.8 Da

IEP (calculated)

3.892

GRAVY (calculated)

-0.607

Length

149 amino acids

Sequence
(BLAST)

001: MAEQLTEEQI AEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMISEVDADQ NGTIDFPEFL NLMARKMKDT DSEEELKEAF KVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD IDGDGQVNYE EFVRMMLAK

Best Arabidopsis Sequence Match ( AT2G27030.3 )
(BLAST)

001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAKR RGKRVMAAKR SSNSAEYKEK NGRRKSHCRI L

Arabidopsis Description

CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.