Factsheet for PGSC0003DMT400019291

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041342	Potato	cytosol, mitochondrion	70.69	50.93
VIT_01s0011g02470.t01	Wine grape	cytosol	69.83	50.0
Bra017355.1-P	Field mustard	cytosol	66.38	47.83
CDY04172	Canola	cytosol	66.38	47.83
CDY59874	Canola	cytosol	66.38	47.83
Bra025149.1-P	Field mustard	cytosol	66.38	47.53
CDY48076	Canola	cytosol	66.38	47.53
CDY51605	Canola	cytosol	66.38	47.53
AT3G25600.1	Thale cress	cytosol	65.52	47.2
PGSC0003DMT400063261	Potato	cytosol	62.07	44.72
KRH07628	Soybean	cytosol	60.34	43.75
GSMUA_Achr9P21860_001	Banana	cytosol, mitochondrion	59.48	42.33
GSMUA_Achr1P25220_001	Banana	cytosol	58.62	41.72
GSMUA_Achr8P29750_001	Banana	cytosol, mitochondrion	57.76	40.85
Os05t0577500-01	Rice	cytosol, mitochondrion	56.03	37.57
TraesCS1A01G416100.1	Wheat	cytosol	54.31	36.63
Zm00001d039110_P001	Maize	cytosol	54.31	36.63
TraesCS1B01G446400.1	Wheat	plastid	54.31	36.0
EES19997	Sorghum	plastid	54.31	33.87
PGSC0003DMT400038352	Potato	cytosol	47.41	33.74
PGSC0003DMT400008152	Potato	cytosol	47.41	33.74
EES03239	Sorghum	plastid	51.72	25.42
Zm00001d044411_P001	Maize	plastid	50.86	25.21
PGSC0003DMT400018569	Potato	cytosol	31.9	24.83
PGSC0003DMT400058435	Potato	cytosol	31.9	24.83
PGSC0003DMT400070437	Potato	cytosol	31.9	24.83
PGSC0003DMT400042062	Potato	cytosol	31.9	24.67
Os01t0604500-01	Rice	cytosol	51.72	24.1
PGSC0003DMT400083971	Potato	extracellular	30.17	23.49
HORVU3Hr1G052770.1	Barley	cytosol	49.14	23.08
TraesCS3A01G216300.1	Wheat	cytosol	50.0	22.75
TraesCS3D01G217900.1	Wheat	cytosol	50.0	22.75
TraesCS3B01G246100.1	Wheat	cytosol	49.14	22.35
Zm00001d053188_P001	Maize	cytosol	20.69	22.02
PGSC0003DMT400070433	Potato	cytosol	27.59	21.77
PGSC0003DMT400034833	Potato	cytosol	28.45	21.57
PGSC0003DMT400083727	Potato	cytosol	25.86	20.41
PGSC0003DMT400054299	Potato	cytosol	18.1	18.58
PGSC0003DMT400097662	Potato	cytosol, mitochondrion	27.59	18.5
PGSC0003DMT400014123	Potato	mitochondrion	18.97	18.03
PGSC0003DMT400010295	Potato	cytosol, mitochondrion	25.86	17.86
PGSC0003DMT400046278	Potato	cytosol	7.76	11.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400019291	EnsemblPlantsGene:PGSC0003DMG400007456	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44256	PANTHER:PTHR44256:SF6
PFAM:PF13499	PFscan:PS50222	PGSC:PGSC0003DMG400007456	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI000294B4A1	UniProt:M1ABV1	MapMan:35.1	:	:

Description

Calmodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400007456]

Coordinates

chr4:+:604799..605804

Molecular Weight (calculated)

13045.9 Da

IEP (calculated)

4.207

GRAVY (calculated)

0.066

Length

116 amino acids

Sequence
(BLAST)

001: MMTTLKSDQL KQLKDIFMRF DLDGDGSLTQ LELAALLRSL GLKPGCGDQL HVLLAKIDHN GNGSIEFDEL VDAIMPDMNE DILINQDQLM ELFQSFDRDG
101: CYVHRAALLC LSVYLI

Best Arabidopsis Sequence Match ( AT3G25600.1 )
(BLAST)

001: MASTKPTDQI KQLKDIFARF DMDKDGSLTQ LELAALLRSL GIKPRGDQIS LLLNQIDRNG NGSVEFDELV VAILPDINEE VLINQEQLME VFRSFDRDGN
101: GSITAAELAG SMAKMGHPLT YRELTEMMTE ADSNGDGVIS FNEFSHIMAK SAADFLGLTA S

Arabidopsis Description

CML16Probable calcium-binding protein CML16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LI84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.