Factsheet for PGSC0003DMT400063261

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114420.1.1	Tomato	cytosol	93.79	88.3
VIT_17s0000g04460.t01	Wine grape	cytosol	73.91	74.38
KRH56721	Soybean	cytosol	73.29	73.29
KRH62961	Soybean	cytosol	72.67	73.12
AT1G18530.1	Thale cress	cytosol	69.57	71.34
PGSC0003DMT400041342	Potato	cytosol, mitochondrion	70.81	70.81
Bra025896.1-P	Field mustard	cytosol	68.94	70.7
CDY26151	Canola	cytosol	68.94	70.7
CDY19221	Canola	cytosol	68.32	70.06
KRH54782	Soybean	cytosol	68.94	69.38
GSMUA_Achr1P25220_001	Banana	cytosol	69.57	68.71
CDX81878	Canola	cytosol	66.46	68.59
CDY21702	Canola	cytosol	66.46	68.59
GSMUA_Achr8P29750_001	Banana	cytosol, mitochondrion	67.7	66.46
GSMUA_Achr9P21860_001	Banana	cytosol, mitochondrion	66.46	65.64
PGSC0003DMT400019291	Potato	cytosol	44.72	62.07
Zm00001d039110_P001	Maize	cytosol	64.6	60.47
Os05t0577500-01	Rice	cytosol, mitochondrion	64.6	60.12
TraesCS1A01G416100.1	Wheat	cytosol	63.35	59.3
Zm00001d053188_P001	Maize	cytosol	39.75	58.72
TraesCS1B01G446400.1	Wheat	plastid	63.35	58.29
EES19997	Sorghum	plastid	63.35	54.84
PGSC0003DMT400008152	Potato	cytosol	53.42	52.76
PGSC0003DMT400038352	Potato	cytosol	50.93	50.31
PGSC0003DMT400046278	Potato	cytosol	20.5	42.86
Zm00001d044411_P001	Maize	plastid	62.11	42.73
EES03239	Sorghum	plastid	60.87	41.53
HORVU3Hr1G052770.1	Barley	cytosol	60.87	39.68
TraesCS3B01G246100.1	Wheat	cytosol	60.87	38.43
TraesCS3A01G216300.1	Wheat	cytosol	60.87	38.43
TraesCS3D01G217900.1	Wheat	cytosol	60.87	38.43
PGSC0003DMT400054299	Potato	cytosol	26.71	38.05
PGSC0003DMT400070437	Potato	cytosol	34.78	37.58
PGSC0003DMT400058435	Potato	cytosol	34.78	37.58
PGSC0003DMT400018569	Potato	cytosol	34.78	37.58
Os01t0604500-01	Rice	cytosol	57.76	37.35
PGSC0003DMT400042062	Potato	cytosol	34.16	36.67
PGSC0003DMT400083727	Potato	cytosol	31.06	34.01
PGSC0003DMT400014123	Potato	mitochondrion	25.47	33.61
PGSC0003DMT400083971	Potato	extracellular	31.06	33.56
PGSC0003DMT400034833	Potato	cytosol	31.68	33.33
PGSC0003DMT400097662	Potato	cytosol, mitochondrion	32.3	30.06
PGSC0003DMT400070433	Potato	cytosol	25.47	27.89
PGSC0003DMT400010295	Potato	cytosol, mitochondrion	27.95	26.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400063261	EnsemblPlantsGene:PGSC0003DMG400024604	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44256	PANTHER:PTHR44256:SF5
PFAM:PF13499	PFscan:PS50222	PGSC:PGSC0003DMG400024604	ScanProsite:PS00018	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI000294B9C5	UniProt:M1CAC6	MapMan:35.1	:	:	:

Description

Calmodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400024604]

Coordinates

chr3:-:54408886..54409597

Molecular Weight (calculated)

17717.1 Da

IEP (calculated)

4.181

GRAVY (calculated)

-0.046

Length

161 amino acids

Sequence
(BLAST)

001: MSRLHVDQLD QLRNIFSRFD MDNDGSLTQL EFAALLRSLG LKPNGDQIHV LFAKMDSNGN GSVEFDELVN AITPDLINGE VLVNKGQLLE VFRSFDRDGN
101: GYITLAELAG SMAKMGQPLS YRELTEMIKE ADVDGDGVIS FNEFATVMAR SAAEFLGVPI L

Best Arabidopsis Sequence Match ( AT1G18530.1 )
(BLAST)

001: MEDQIRQLKD IFDRFDMDAD GSLTILELAA LLRSLGLKPS GDQIHVLLAS MDSNGNGFVE FDELVGTILP DLNEEVLINS EQLLEIFKSF DRDGNGFISA
101: AELAGAMAKM GQPLTYKELT EMIKEADTNG DGVISFGEFA SIMAKSAVDY FGLKINS

Arabidopsis Description

CML15Probable calcium-binding protein CML15 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ75]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.