Factsheet for PGSC0003DMT400083727

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105630.2.1	Tomato	cytosol	95.92	95.92
VIT_00s0179g00280.t01	Wine grape	cytosol	73.47	72.48
KRH67274	Soybean	cytosol	69.39	68.92
KRG95596	Soybean	cytosol	67.35	66.89
PGSC0003DMT400046278	Potato	cytosol	34.69	66.23
GSMUA_Achr2P12680_001	Banana	cytosol	65.31	64.86
PGSC0003DMT400058435	Potato	cytosol	64.63	63.76
GSMUA_Achr4P22570_001	Banana	cytosol	63.95	63.51
GSMUA_Achr7P01390_001	Banana	cytosol	63.95	63.51
PGSC0003DMT400042062	Potato	cytosol	64.63	63.33
KRH71363	Soybean	cytosol	63.95	63.09
PGSC0003DMT400070437	Potato	cytosol	63.95	63.09
PGSC0003DMT400018569	Potato	cytosol	63.95	63.09
PGSC0003DMT400054299	Potato	cytosol	47.62	61.95
KRH32074	Soybean	cytosol	61.9	61.07
PGSC0003DMT400083971	Potato	extracellular	61.22	60.4
PGSC0003DMT400034833	Potato	cytosol	61.22	58.82
GSMUA_Achr1P04700_001	Banana	cytosol	59.18	58.78
GSMUA_Achr1P27230_001	Banana	cytosol	58.5	58.11
GSMUA_Achr5P09010_001	Banana	cytosol	57.82	57.43
GSMUA_Achr6P24410_001	Banana	cytosol	57.82	57.05
PGSC0003DMT400014123	Potato	mitochondrion	44.22	53.28
Os03t0743500-02	Rice	nucleus	55.78	53.25
KXG37587	Sorghum	cytosol	55.1	52.6
PGSC0003DMT400097662	Potato	cytosol, mitochondrion	55.1	46.82
Zm00001d033980_P001	Maize	cytosol	46.26	43.31
GSMUA_Achr3P25390_001	Banana	cytosol	49.66	39.89
TraesCS5A01G382800.2	Wheat	plastid	50.34	39.57
PGSC0003DMT400008152	Potato	cytosol	41.5	37.42
GSMUA_Achr1P14070_001	Banana	cytosol	55.1	35.84
PGSC0003DMT400038352	Potato	cytosol	39.46	35.58
PGSC0003DMT400070433	Potato	cytosol	35.37	35.37
PGSC0003DMT400010295	Potato	cytosol, mitochondrion	38.1	33.33
PGSC0003DMT400041342	Potato	cytosol, mitochondrion	34.69	31.68
PGSC0003DMT400063261	Potato	cytosol	34.01	31.06
PGSC0003DMT400019291	Potato	cytosol	20.41	25.86
KXG37588	Sorghum	mitochondrion, nucleus	1.36	1.46

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102597429	MapMan:35.1	ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1D715
PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG400033565	PGSC:PGSC0003DMG400033565	EnsemblPlants:PGSC0003DMT400083727	PRINTS:PR00450	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR23050	PANTHER:PTHR23050:SF211	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002960672
RefSeq:XP_006351748.1	:	:	:	:	:

Description

Calmodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400033565]

Coordinates

chr1:+:82292589..82293517

Molecular Weight (calculated)

16966.9 Da

IEP (calculated)

3.881

GRAVY (calculated)

-0.443

Length

147 amino acids

Sequence
(BLAST)

001: MADALTEDQI SEFRQAFWVI DKDCDGVIRM EELASVIQSL HEHPTREEIQ EMINEVDPDG DGSIDFEDFL NIMAKKLKDN VTEELKEAFK VFDRDQDGFI
101: SANELRNVMM NLGERLTEEE AQQMIREADL DGDGLVSYDE FVKIMII

Best Arabidopsis Sequence Match ( AT1G66410.1 )
(BLAST)

001: MADQLTDEQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMAKKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK

Arabidopsis Description

CAM4Calmodulin 4 [Source:UniProtKB/TrEMBL;Acc:F4IEU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.