Factsheet for PGSC0003DMT400010295

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090810.2.1	Tomato	cytosol, mitochondrion	99.4	99.4
AT3G50360.1	Thale cress	cytosol	76.79	76.33
KRH10567	Soybean	endoplasmic reticulum	73.21	72.35
TraesCS2A01G166500.1	Wheat	cytosol, mitochondrion	72.02	72.02
TraesCS2B01G192400.1	Wheat	cytosol, mitochondrion	72.02	72.02
TraesCS2D01G173900.1	Wheat	cytosol, mitochondrion	72.02	72.02
HORVU2Hr1G030640.1	Barley	cytosol	72.02	71.6
VIT_05s0094g01240.t01	Wine grape	cytosol	69.05	70.3
Zm00001d022160_P003	Maize	cytosol, mitochondrion	70.24	68.6
KRH43884	Soybean	cytosol	51.79	66.41
GSMUA_Achr6P10140_001	Banana	cytosol	64.29	66.26
CDX83123	Canola	golgi	75.0	65.97
CDY62753	Canola	cytosol	76.19	64.0
KXG36700	Sorghum	cytosol	65.48	63.95
KRG98826	Soybean	cytosol	58.93	63.06
KRG98823	Soybean	cytosol	57.74	61.78
Zm00001d014271_P001	Maize	cytosol	64.88	60.89
CDX75623	Canola	extracellular	64.88	60.56
TraesCS7B01G412100.1	Wheat	cytosol	64.88	60.22
HORVU7Hr1G113200.1	Barley	cytosol	64.88	60.22
AT4G37010.2	Thale cress	cytosol, mitochondrion	60.71	59.65
VIT_07s0031g00700.t01	Wine grape	cytosol	71.43	59.41
Os10t0389000-01	Rice	plasma membrane	65.48	57.59
Os07t0618800-01	Rice	plasma membrane	70.24	56.46
PGSC0003DMT400083971	Potato	extracellular	41.67	46.98
PGSC0003DMT400058435	Potato	cytosol	39.29	44.3
PGSC0003DMT400018569	Potato	cytosol	39.29	44.3
PGSC0003DMT400070437	Potato	cytosol	39.29	44.3
PGSC0003DMT400054299	Potato	cytosol	27.38	40.71
PGSC0003DMT400042062	Potato	cytosol	36.31	40.67
PGSC0003DMT400046278	Potato	cytosol	17.86	38.96
PGSC0003DMT400034833	Potato	cytosol	35.12	38.56
PGSC0003DMT400083727	Potato	cytosol	33.33	38.1
PGSC0003DMT400014123	Potato	mitochondrion	26.79	36.89
PGSC0003DMT400097662	Potato	cytosol, mitochondrion	34.52	33.53
PGSC0003DMT400070433	Potato	cytosol	29.17	33.33
PGSC0003DMT400008152	Potato	cytosol	29.76	30.67
PGSC0003DMT400041342	Potato	cytosol, mitochondrion	27.98	29.19
PGSC0003DMT400038352	Potato	cytosol	27.98	28.83
PGSC0003DMT400063261	Potato	cytosol	26.79	27.95
PGSC0003DMT400019291	Potato	cytosol	17.86	25.86

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102594274	MapMan:14.6.1.1	MapMan:16.11.2.3	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M0ZXT8
PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG402004023	PGSC:PGSC0003DMG402004023	EnsemblPlants:PGSC0003DMT400010295	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR23050	PANTHER:PTHR23050:SF167	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000294E750	RefSeq:XP_006339902.1

Description

Caltractin [Source:PGSC_GENE;Acc:PGSC0003DMG402004023]

Coordinates

chr2:+:43892566..43895831

Molecular Weight (calculated)

18947.2 Da

IEP (calculated)

4.438

GRAVY (calculated)

-0.726

Length

168 amino acids

Sequence
(BLAST)

001: MASVSRKISR KETRNRHPGL TQQKRQEIKE AFELFDTDGS GTIDASELNV AMRALGFEMT EEQVEQMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKED
101: LAKAFNILDQ DKNGKISAAD IQQIAKELGE NFSAKEIQEM IEAADRDRDG EVSAEEFMRM MRKTSFAN

Best Arabidopsis Sequence Match ( AT3G50360.1 )
(BLAST)

001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN

Arabidopsis Description

CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.