Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50360.1 | KRG92986 | AT2G39340.1 | 19843313 |
| AT3G50360.1 | KRH36229 | AT2G39340.1 | 19843313 |
| AT3G50360.1 | KRH11322 | AT3G06290.1 | 19843313 |
| AT3G50360.1 | KRH20952 | AT3G06290.1 | 19843313 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH10567 | Soybean | endoplasmic reticulum | 95.42 | 73.53 |
| KRG98826 | Soybean | cytosol | 77.86 | 64.97 |
| KRG98823 | Soybean | cytosol | 77.1 | 64.33 |
| AT3G50360.1 | Thale cress | cytosol | 74.05 | 57.4 |
| VIT_05s0094g01240.t01 | Wine grape | cytosol | 66.41 | 52.73 |
| Solyc04g026350.2.1 | Tomato | cytosol | 68.7 | 52.02 |
| TraesCS2D01G173900.1 | Wheat | cytosol, mitochondrion | 66.41 | 51.79 |
| TraesCS2B01G192400.1 | Wheat | cytosol, mitochondrion | 66.41 | 51.79 |
| TraesCS2A01G166500.1 | Wheat | cytosol, mitochondrion | 66.41 | 51.79 |
| Solyc02g090810.2.1 | Tomato | cytosol, mitochondrion | 66.41 | 51.79 |
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 66.41 | 51.79 |
| HORVU2Hr1G030640.1 | Barley | cytosol | 66.41 | 51.48 |
| CDX83123 | Canola | golgi | 72.52 | 49.74 |
| Zm00001d022160_P003 | Maize | cytosol, mitochondrion | 64.89 | 49.42 |
| CDY62753 | Canola | cytosol | 73.28 | 48.0 |
| KXG36700 | Sorghum | cytosol | 60.31 | 45.93 |
| GSMUA_Achr6P10140_001 | Banana | cytosol | 55.73 | 44.79 |
| CDX75623 | Canola | extracellular | 59.54 | 43.33 |
| VIT_07s0031g00700.t01 | Wine grape | cytosol | 66.41 | 43.07 |
| AT4G37010.2 | Thale cress | cytosol, mitochondrion | 55.73 | 42.69 |
| Os07t0618800-01 | Rice | plasma membrane | 67.18 | 42.11 |
| TraesCS7B01G412100.1 | Wheat | cytosol | 58.02 | 41.99 |
| HORVU7Hr1G113200.1 | Barley | cytosol | 57.25 | 41.44 |
| Zm00001d014271_P001 | Maize | cytosol | 56.49 | 41.34 |
| Os10t0389000-01 | Rice | plasma membrane | 58.78 | 40.31 |
| KRG94975 | Soybean | nucleus | 35.11 | 30.87 |
| KRH31638 | Soybean | cytosol | 33.59 | 29.33 |
| KRH69070 | Soybean | cytosol | 33.59 | 29.33 |
| KRH34350 | Soybean | cytosol | 32.82 | 28.67 |
| KRH67274 | Soybean | cytosol | 32.06 | 28.38 |
| KRG92449 | Soybean | cytosol | 32.06 | 28.0 |
| KRG95596 | Soybean | cytosol | 31.3 | 27.7 |
| KRH68729 | Soybean | cytosol | 31.3 | 27.52 |
| KRG94637 | Soybean | cytosol | 23.66 | 27.19 |
| KRH71363 | Soybean | cytosol | 30.53 | 26.85 |
| KRG96966 | Soybean | cytosol | 30.53 | 26.85 |
| KRH32074 | Soybean | cytosol | 29.77 | 26.17 |
| KRG92667 | Soybean | cytosol | 28.24 | 24.83 |
| KRH34082 | Soybean | cytosol | 28.24 | 24.83 |
| KRH18664 | Soybean | cytosol | 25.95 | 24.29 |
| KRG89812 | Soybean | cytosol, mitochondrion | 30.53 | 24.24 |
| KRH04023 | Soybean | cytosol | 26.72 | 23.81 |
| KRH56721 | Soybean | cytosol | 29.01 | 23.6 |
| KRH77406 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 25.95 | 23.13 |
| KRH28027 | Soybean | cytosol, endoplasmic reticulum, nucleus | 25.95 | 23.13 |
| KRH62961 | Soybean | cytosol | 25.95 | 21.25 |
| KRH54782 | Soybean | cytosol | 25.19 | 20.62 |
| KRH30413 | Soybean | cytosol | 24.43 | 20.13 |
| KRH07628 | Soybean | cytosol | 24.43 | 20.0 |
| KRH25249 | Soybean | cytosol | 23.66 | 19.02 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | UniProt:A0A0R0INJ2 | EMBL:ACUP02004902 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS |
| InterPro:EF_hand_dom | EnsemblPlantsGene:GLYMA_08G177600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 |
| EnsemblPlants:KRH43884 | ProteinID:KRH43884 | ProteinID:KRH43884.1 | PFAM:PF13405 | PFAM:PF13833 | ScanProsite:PS00018 |
| PFscan:PS50222 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF167 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0006EDC605 |
Description
hypothetical protein
Coordinates
chr8:-:14231717..14233925
Molecular Weight (calculated)
15291.0 Da
IEP (calculated)
5.092
GRAVY (calculated)
-1.022
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLYRGESR RYNNKPRGRH NLTTQKKQEI KEAFELFDTD GSGTIDAKEL NVAMRALGFE MTEEQINKMI EDGTRMGKIS ALDIKRIAKE LGQNFTDREI
101: QEMVDEADQD NDREVSAEEF ITMMNRNRFH H
101: QEMVDEADQD NDREVSAEEF ITMMNRNRFH H
001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
Arabidopsis Description
CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.