Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G166500.1 | Wheat | cytosol, mitochondrion | 100.0 | 100.0 |
| TraesCS2B01G192400.1 | Wheat | cytosol, mitochondrion | 100.0 | 100.0 |
| HORVU2Hr1G030640.1 | Barley | cytosol | 99.4 | 98.82 |
| Zm00001d022160_P003 | Maize | cytosol, mitochondrion | 86.9 | 84.88 |
| KXG36700 | Sorghum | cytosol | 80.95 | 79.07 |
| Os07t0618800-01 | Rice | plasma membrane | 92.26 | 74.16 |
| KRH10567 | Soybean | endoplasmic reticulum | 75.0 | 74.12 |
| AT3G50360.1 | Thale cress | cytosol | 74.4 | 73.96 |
| GSMUA_Achr6P10140_001 | Banana | cytosol | 70.83 | 73.01 |
| VIT_05s0094g01240.t01 | Wine grape | cytosol | 71.43 | 72.73 |
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 72.02 | 72.02 |
| Solyc02g090810.2.1 | Tomato | cytosol, mitochondrion | 72.02 | 72.02 |
| Solyc04g026350.2.1 | Tomato | cytosol | 73.81 | 71.68 |
| KRH43884 | Soybean | cytosol | 51.79 | 66.41 |
| CDX83123 | Canola | golgi | 75.0 | 65.97 |
| KRG98823 | Soybean | cytosol | 60.71 | 64.97 |
| KRG98826 | Soybean | cytosol | 60.71 | 64.97 |
| CDY62753 | Canola | cytosol | 75.6 | 63.5 |
| AT4G37010.2 | Thale cress | cytosol, mitochondrion | 60.71 | 59.65 |
| CDX75623 | Canola | extracellular | 63.69 | 59.44 |
| VIT_07s0031g00700.t01 | Wine grape | cytosol | 70.83 | 58.91 |
| TraesCS3D01G188600.1 | Wheat | cytosol | 38.69 | 38.92 |
| TraesCS5D01G068100.1 | Wheat | cytosol | 36.31 | 37.42 |
| TraesCS5D01G153400.1 | Wheat | cytosol | 39.88 | 37.22 |
| TraesCS5D01G392200.1 | Wheat | cytosol | 33.93 | 36.77 |
| TraesCS3D01G194500.2 | Wheat | cytosol | 33.93 | 35.85 |
| TraesCS5D01G068000.1 | Wheat | cytosol | 35.71 | 35.71 |
| TraesCS3D01G328300.1 | Wheat | cytosol | 38.1 | 35.16 |
| TraesCS7D01G313100.1 | Wheat | cytosol | 27.38 | 31.08 |
| TraesCS1D01G308000.1 | Wheat | cytosol | 25.0 | 28.0 |
| TraesCS4D01G126100.1 | Wheat | cytosol | 38.1 | 26.56 |
| TraesCS1D01G197600.1 | Wheat | cytosol | 24.4 | 21.13 |
| TraesCS3D01G217900.1 | Wheat | cytosol | 29.76 | 19.61 |
| TraesCS5D01G392100.1 | Wheat | mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G173900.1 | EnsemblPlantsGene:TraesCS2D01G173900 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF167 |
| PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 | TIGR:cd00051 |
| MapMan:14.6.1.1 | MapMan:16.11.2.3 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:117391259..117394240
Molecular Weight (calculated)
19344.7 Da
IEP (calculated)
4.438
GRAVY (calculated)
-0.951
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTMKGQTRR ERPRTRPHGL TQQKRQEIKE AFDLFDTDNS GTIDAKELNV AMRALGFEMT EEQINQMIAD VDKDGSGSID YEEFEHMMTA KIGERDTKEE
101: LTKAFRIIDQ DKNGKISDVD IQRIAKELGE NFTLQEIQEM VQEADQNGDG EIDFGEFARM MKKTSYGY
101: LTKAFRIIDQ DKNGKISDVD IQRIAKELGE NFTLQEIQEM VQEADQNGDG EIDFGEFARM MKKTSYGY
001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
Arabidopsis Description
CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.