Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G297000.5 | Wheat | nucleus | 95.23 | 94.84 |
| TraesCS1A01G287600.8 | Wheat | nucleus | 94.72 | 94.32 |
| HORVU1Hr1G071780.21 | Barley | nucleus | 93.99 | 93.99 |
| Os05t0462600-01 | Rice | mitochondrion | 60.21 | 69.58 |
| OQU78144 | Sorghum | nucleus | 71.09 | 68.6 |
| Zm00001d010546_P003 | Maize | nucleus | 70.78 | 66.05 |
| Zm00001d038393_P012 | Maize | nucleus | 68.19 | 64.07 |
| VIT_13s0067g03720.t01 | Wine grape | plastid | 29.33 | 56.15 |
| TraesCS3D01G348300.1 | Wheat | cytosol | 61.35 | 53.48 |
| Zm00001d003061_P001 | Maize | nucleus | 6.11 | 47.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.15 | 47.15 |
| Solyc05g054910.2.1 | Tomato | nucleus | 41.45 | 41.62 |
| KRG92986 | Soybean | nucleus | 43.11 | 41.35 |
| KRH36229 | Soybean | nucleus | 42.8 | 40.89 |
| CDX93271 | Canola | nucleus | 41.45 | 40.57 |
| CDX74854 | Canola | nucleus | 41.66 | 40.48 |
| Bra005050.1-P | Field mustard | nucleus | 41.55 | 40.38 |
| Bra005052.1-P | Field mustard | nucleus | 41.55 | 40.38 |
| AT2G39340.1 | Thale cress | nucleus | 41.87 | 40.16 |
| CDY44640 | Canola | nucleus | 41.87 | 40.12 |
| CDY07001 | Canola | nucleus | 40.52 | 39.82 |
| Bra017081.1-P | Field mustard | nucleus | 40.52 | 39.78 |
| VIT_13s0067g03680.t01 | Wine grape | nucleus | 12.54 | 30.4 |
| TraesCS6D01G344300.1 | Wheat | nucleus | 18.96 | 25.63 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G286500.8 | EnsemblPlantsGene:TraesCS1D01G286500 | Gene3D:1.25.40.990 | InterPro:IPR000717 | InterPro:PCI_dom | InterPro:SAC3/GANP/THP3 |
| PANTHER:PTHR12436 | PANTHER:PTHR12436:SF28 | PFAM:PF03399 | PFscan:PS50250 | SEG:seg | MapMan:16.11.2.1 |
Description
No Description!
Coordinates
chr1D:-:384836268..384843852
Molecular Weight (calculated)
105401.0 Da
IEP (calculated)
8.565
GRAVY (calculated)
-0.716
Length
965 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHGAAPAA GSDSTRVEVS GTGQTNQPAY PPLVSGDHSW SSTTGAAAAG SWNYPVANQS QDAVYYDPQR DVSVSGDNQN VASSAPPAVQ STMGLTNASH
101: SHVPYSSSLQ HGYNPAEYAN YYYNYPQATN SCSVQQGGAN QHSGAAYQPL TSFQNSGSYV DPTSNTYYNA GGHQTAPGYA TTNYYYQTDT RNDGSSGNNY
201: AQSYQNYPSS DTNAAQSSST VPANSFSYQQ QYNQWPYYYN HSVPTPAGNP VAGSSNIDNT VVNTTSGYSY PSTEPPPPGT TPWKSNSSAS VAPPVQAPSV
301: PEPQNQYVQQ AQLTPGFQNQ YAYQAPGVPM SQNYYANQAP AYPQNNMNVN QVPLNNHGDQ QKSGSLTTGI FSSENKTQIP TIPRIAPGFS MVIPKSEKKT
401: VGADLAKKPA YVSVSVPKND VKAVQHGSDA KSLPFSLRNY ATRNLSRCKD EAQRAACQSM IQQITSKAIS NGTLLTKNWD TEPLIPLPEN LLTMTETSSA
501: SNSSSLPNST PRRRLKSRWE PVPEEKVTEK VEPLAKPLMN GNTHNNLKAQ NRMGDSWNLG KSLQSPHAPS NKITHRLSKK QKMGSYSSVV QNGDNSSDSD
601: KEKDLTKYYA NASALANSPE EKKRREHRSK RFEKSKDSSS KSRNSAVNKG AVAHIHTRRP ISALVTGSYK DGSSLAVEDM DWDALTVKGT CQEIEKRYLR
701: LTSAPDPSTV RPEHVLEKAL SMVETSQKNY LYKCDQLKSI RQDLTVQRIQ NELTVKVYET HARLALQAGD LAEFNQCQSQ LKRLYREGNN GCYFEFSAYN
801: LLCVMLHSNN KRDLLSSMAS LSKEAKQDGA VKHALAVHAA VSSGNYVIFF KLYKQGPNLN SCLMDLYVER MRFEAIKCMS RSYRPTVPVG YVAQVLGFLP
901: NGDDRSEECE IWLKAHGAVL SVDNGGELQI DTKASSSTLF MPEPENAVAH GDASLAVNDF FARTS
101: SHVPYSSSLQ HGYNPAEYAN YYYNYPQATN SCSVQQGGAN QHSGAAYQPL TSFQNSGSYV DPTSNTYYNA GGHQTAPGYA TTNYYYQTDT RNDGSSGNNY
201: AQSYQNYPSS DTNAAQSSST VPANSFSYQQ QYNQWPYYYN HSVPTPAGNP VAGSSNIDNT VVNTTSGYSY PSTEPPPPGT TPWKSNSSAS VAPPVQAPSV
301: PEPQNQYVQQ AQLTPGFQNQ YAYQAPGVPM SQNYYANQAP AYPQNNMNVN QVPLNNHGDQ QKSGSLTTGI FSSENKTQIP TIPRIAPGFS MVIPKSEKKT
401: VGADLAKKPA YVSVSVPKND VKAVQHGSDA KSLPFSLRNY ATRNLSRCKD EAQRAACQSM IQQITSKAIS NGTLLTKNWD TEPLIPLPEN LLTMTETSSA
501: SNSSSLPNST PRRRLKSRWE PVPEEKVTEK VEPLAKPLMN GNTHNNLKAQ NRMGDSWNLG KSLQSPHAPS NKITHRLSKK QKMGSYSSVV QNGDNSSDSD
601: KEKDLTKYYA NASALANSPE EKKRREHRSK RFEKSKDSSS KSRNSAVNKG AVAHIHTRRP ISALVTGSYK DGSSLAVEDM DWDALTVKGT CQEIEKRYLR
701: LTSAPDPSTV RPEHVLEKAL SMVETSQKNY LYKCDQLKSI RQDLTVQRIQ NELTVKVYET HARLALQAGD LAEFNQCQSQ LKRLYREGNN GCYFEFSAYN
801: LLCVMLHSNN KRDLLSSMAS LSKEAKQDGA VKHALAVHAA VSSGNYVIFF KLYKQGPNLN SCLMDLYVER MRFEAIKCMS RSYRPTVPVG YVAQVLGFLP
901: NGDDRSEECE IWLKAHGAVL SVDNGGELQI DTKASSSTLF MPEPENAVAH GDASLAVNDF FARTS
0001: MNHGGNTQAV APMDPNSIEN RYGVDGSQTQ KYSYQYSTGS ESAPWTGHSV ENQAVENGNY SNSNYYHPQP TGPATGNVQE IPNTVSFTIS STSGTANVAQ
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
Arabidopsis Description
SAC3ASAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.