Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017081.1-P | Field mustard | nucleus | 98.17 | 98.07 |
| CDX93271 | Canola | nucleus | 95.93 | 95.54 |
| AT2G39340.1 | Thale cress | nucleus | 81.47 | 79.52 |
| CDX74854 | Canola | nucleus | 79.94 | 79.05 |
| CDY44640 | Canola | nucleus | 80.04 | 78.05 |
| VIT_13s0067g03720.t01 | Wine grape | plastid | 31.16 | 60.71 |
| KRG92986 | Soybean | nucleus | 51.12 | 49.9 |
| KRH36229 | Soybean | nucleus | 50.71 | 49.31 |
| Solyc05g054910.2.1 | Tomato | nucleus | 44.2 | 45.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.57 | 43.32 |
| Os05t0462600-01 | Rice | mitochondrion | 36.25 | 42.63 |
| VIT_13s0067g03680.t01 | Wine grape | nucleus | 17.21 | 42.46 |
| HORVU1Hr1G071780.21 | Barley | nucleus | 39.82 | 40.52 |
| TraesCS1D01G286500.8 | Wheat | nucleus | 39.82 | 40.52 |
| TraesCS1B01G297000.5 | Wheat | nucleus | 39.41 | 39.94 |
| OQU87820 | Sorghum | nucleus | 38.09 | 39.91 |
| TraesCS1A01G287600.8 | Wheat | nucleus | 39.1 | 39.63 |
| Os01t0836400-02 | Rice | nucleus | 36.56 | 39.28 |
| OQU78144 | Sorghum | nucleus | 38.9 | 38.2 |
| Zm00001d010546_P003 | Maize | nucleus | 39.41 | 37.43 |
| Zm00001d003061_P001 | Maize | nucleus | 4.58 | 36.59 |
| TraesCS3A01G354400.3 | Wheat | nucleus | 40.22 | 36.57 |
| TraesCS3D01G348300.1 | Wheat | cytosol | 40.12 | 35.59 |
| TraesCS3B01G387400.1 | Wheat | nucleus | 40.02 | 35.06 |
| Zm00001d038393_P012 | Maize | nucleus | 36.56 | 34.96 |
| HORVU3Hr1G087140.16 | Barley | nucleus, plastid | 39.82 | 33.25 |
| HORVU1Hr1G029080.1 | Barley | extracellular | 5.19 | 30.0 |
Protein Annotations
| EnsemblPlants:CDY07001 | EnsemblPlantsGene:GSBRNA2T00123314001 | Gene3D:1.25.40.990 | InterPro:IPR000717 | InterPro:PCI_dom | InterPro:SAC3/GANP/THP3 |
| PANTHER:PTHR12436 | PANTHER:PTHR12436:SF28 | PFAM:PF03399 | PFscan:PS50250 | ProteinID:CDY07001 | ProteinID:CDY07001.1 |
| SEG:seg | UniParc:UPI0004EE20EE | MapMan:16.11.2.1 | : | : | : |
Description
BnaA04g23140D
Coordinates
chrLK031974:+:622723..628143
Molecular Weight (calculated)
108000.0 Da
IEP (calculated)
7.000
GRAVY (calculated)
-0.782
Length
982 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQGGNTQTV APLDPNPIEK RYGVEGSQVQ TSPYQYSTGS DAASWTNYSV DNQAVQQNGN YSNSNYYHPQ PPVPATGNVH ETSSSTSGTV NVAQDYSGYT
101: PYQTPSDPQN YSNTGYTNYY SGGYQQQQPS QPYTQPVGAY QNTGAPYSSF QNPGSYAGTA SYSGTYYNPA DYQTTTGGYQ STTYNSQTAG GYVNQTPTSS
201: NQGNYPYQNY TPDAANIHSA TAATATPVHY QQSYQQWPGY YSQTEVPCAP GTEKLPPTSA FSQSFPVAGG VASEMPASNG QPAPSYAQTW RQETDSTQPP
301: SQQPAAAVSA SNNAYWMHQT PSQQAHYPVP PQNHYQSPLE TKPLYETPIQ GHQRATYPQE LNSQASINQA PLGYRQPTQT TPSVDTQRVS KIQIPTNPRI
401: ASNLPSGYTK MDKGRSPAGA TQTPAYLSVS MSNPKGHTAA MPEPGTFPKA LCGFVERAFA RCKDDKEKAS CQAALKKIIT EATNDGTINT RDWDIEPLST
501: VLNTDVTNTE SSSTPLSSLQ NKSPTRRPKS RWEPLVESKP FVKPASTFTS GVKFGGWNHP NVNNKKSSET FQKVDAVTGS KPTYFAQNSA KKSFQRPVKR
601: QRFTGGAIDD EESSDSEKEL TPYYSSAMSL ASSADEKKRR DSRSKRFEKV QGHSRGNDIP TPKISNVRRG TAMRLGEVFD ESGSRAVEDM DWDALTVKGT
701: CQEIEKRYLR LTSAPDPTTV RPEDVLVKAL SMVQDSPKNY LYKCDQLKSI RQDLTVQRIH NHLTAKVYET HARFALEAGD LTEYNQCLSQ LKILYAEGIE
801: GCTLEFAAYS LLYITLHSNN NRELLSSMSR LSKEAKSDEA VRHALSVRSA VTSGNYVMFF RLYKTAPNMN SCLMDLYVEK MRYKAVTFIS RSCRPSIPVS
901: YLAQVLGFAG TSSEGIGEKE TDGMEECSEW LKSHGASLIA DSNGDMVLDT KASSTSLFMP EPEDAVAHGD RYLDVNDFFT RT
101: PYQTPSDPQN YSNTGYTNYY SGGYQQQQPS QPYTQPVGAY QNTGAPYSSF QNPGSYAGTA SYSGTYYNPA DYQTTTGGYQ STTYNSQTAG GYVNQTPTSS
201: NQGNYPYQNY TPDAANIHSA TAATATPVHY QQSYQQWPGY YSQTEVPCAP GTEKLPPTSA FSQSFPVAGG VASEMPASNG QPAPSYAQTW RQETDSTQPP
301: SQQPAAAVSA SNNAYWMHQT PSQQAHYPVP PQNHYQSPLE TKPLYETPIQ GHQRATYPQE LNSQASINQA PLGYRQPTQT TPSVDTQRVS KIQIPTNPRI
401: ASNLPSGYTK MDKGRSPAGA TQTPAYLSVS MSNPKGHTAA MPEPGTFPKA LCGFVERAFA RCKDDKEKAS CQAALKKIIT EATNDGTINT RDWDIEPLST
501: VLNTDVTNTE SSSTPLSSLQ NKSPTRRPKS RWEPLVESKP FVKPASTFTS GVKFGGWNHP NVNNKKSSET FQKVDAVTGS KPTYFAQNSA KKSFQRPVKR
601: QRFTGGAIDD EESSDSEKEL TPYYSSAMSL ASSADEKKRR DSRSKRFEKV QGHSRGNDIP TPKISNVRRG TAMRLGEVFD ESGSRAVEDM DWDALTVKGT
701: CQEIEKRYLR LTSAPDPTTV RPEDVLVKAL SMVQDSPKNY LYKCDQLKSI RQDLTVQRIH NHLTAKVYET HARFALEAGD LTEYNQCLSQ LKILYAEGIE
801: GCTLEFAAYS LLYITLHSNN NRELLSSMSR LSKEAKSDEA VRHALSVRSA VTSGNYVMFF RLYKTAPNMN SCLMDLYVEK MRYKAVTFIS RSCRPSIPVS
901: YLAQVLGFAG TSSEGIGEKE TDGMEECSEW LKSHGASLIA DSNGDMVLDT KASSTSLFMP EPEDAVAHGD RYLDVNDFFT RT
0001: MNHGGNTQAV APMDPNSIEN RYGVDGSQTQ KYSYQYSTGS ESAPWTGHSV ENQAVENGNY SNSNYYHPQP TGPATGNVQE IPNTVSFTIS STSGTANVAQ
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
Arabidopsis Description
SAC3ASAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.