CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70685
CDX74111
CDX74854
CDX78681
CDX93271
CDY02157
CDY02158
CDY05249
CDY07001
CDY07438
CDY08059
CDY23071
CDY23072
CDY24705
CDY39298
CDY44640
CDY70818

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19560.1	CDX74854	AT2G39340.1	19843313
AT2G19560.1	CDX93271	AT2G39340.1	19843313
AT2G19560.1	CDY07001	AT2G39340.1	19843313
AT2G19560.1	CDY44640	AT2G39340.1	19843313
AT2G19560.1	CDX74111	AT3G06290.1	19843313
AT2G19560.1	CDY05249	AT3G06290.1	19843313
AT2G19560.1	CDY08059	AT3G06290.1	19843313
AT2G19560.1	CDY24705	AT3G06290.1	19843313
AT2G19560.1	CDY70818	AT3G06290.1	19843313
AT2G19560.1	CDX70685	AT5G16310.1	19843313
AT2G19560.1	CDX78681	AT5G16310.1	19843313
AT2G19560.1	CDY07438	AT5G45010.1	19843313
AT2G19560.1	CDY39298	AT5G45010.1	19843313
AT2G19560.1	CDY02157	AT5G61290.1	19843313
AT2G19560.1	CDY02158	AT5G61290.1	19843313
AT2G19560.1	CDY23071	AT5G61290.1	19843313
AT2G19560.1	CDY23072	AT5G61290.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66989	Canola	cytosol	99.72	99.44
CDY35873	Canola	cytosol	99.16	86.2
AT2G19560.1	Thale cress	cytosol	94.43	82.08
CDY13554	Canola	cytosol	36.77	76.3
PGSC0003DMT400056705	Potato	cytosol	36.77	74.16
KRH19149	Soybean	cytosol, nucleus	81.62	71.46
KRH02720	Soybean	cytosol, nucleus	81.89	71.19
VIT_11s0016g02290.t01	Wine grape	cytosol	81.34	70.7
PGSC0003DMT400034206	Potato	cytosol	79.67	68.92
Solyc07g039210.2.1	Tomato	nucleus	78.83	68.19
GSMUA_Achr7P18480_001	Banana	cytosol	72.7	63.2
EER98853	Sorghum	cytosol	67.97	59.66
Os09t0386400-01	Rice	cytosol	67.97	59.66
TraesCS5D01G207800.1	Wheat	cytosol	67.13	58.92
HORVU5Hr1G059930.4	Barley	cytosol	66.85	58.68
TraesCS5A01G201500.1	Wheat	cytosol	66.85	58.68
TraesCS5B01G200200.1	Wheat	cytosol	66.85	58.68
Zm00001d020359_P003	Maize	cytosol	67.97	57.01
CDY13555	Canola	cytosol, nucleus, vacuole	21.45	40.1

Protein Annotations

EnsemblPlants:CDY67021	EnsemblPlantsGene:GSBRNA2T00058642001	Gene3D:1.10.10.10	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:IPR036388
InterPro:PCI_dom	InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12732	PANTHER:PTHR12732:SF0	PFAM:PF01399	PFscan:PS50250
ProteinID:CDY67021	ProteinID:CDY67021.1	UniParc:UPI0004EE6E94	UniProt:A0A078JMN6	MapMan:16.11.2.2	:

Description

BnaC05g50310DBnaC05g50310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMN6]

Coordinates

chrLK035681:-:2469..4944

Molecular Weight (calculated)

41634.2 Da

IEP (calculated)

9.795

GRAVY (calculated)

-0.160

Length

359 amino acids

Sequence
(BLAST)

001: MQDASSLIRQ SDKFSEYGEI LAHLFRSLQS YRVGNLVEAY LAFEKFANAF VQEFRNWESA WALEALYVVC YEVRILAEKA DKELTSNGKS PEKLKAAGSL
101: LMKVFGVLAG KGPKRVGALY VTCQLFKTYF KLGTVNLCRS VIRSIETARI FDFEEFPRRD KVTYMYYTGR LEVFNENFPA ADTKLSYALQ HCNPKRERNI
201: RMILKYLIPV KLSLGIIPKD ELLQKYNLHE YMNVVQALRK GDLRLLRHAL QEHEDRFLRS GVYLVLEKLE LQVYQRLMKK IYIIQKLSDP ARAHQLKLEV
301: IAKALRWLEI DMDLDEVECI MTILIYKNLV KGYLAHKSKV VVLSKQDPFP KLNGKPVGS

Best Arabidopsis Sequence Match ( AT2G19560.1 )
(BLAST)

001: MAYVSMGEAH RRITEYLNRF CDAVSYQDSS TLCRLLSFSS NSPPLLSLAD ALNVFQDSSS LIRQSDRFSE YGEILAHVFR SLQSYRVGNL VEAYLAFDKF
101: ANAFVQEFRN WESAWALEAL YVVCYEIRVL AEKADKDLTS NGKSPEKLKA AGSLLMKVFG VLAGKGPKRV GALYVTCQLF KTYFKLGTVN LCRSVIRSIE
201: TARIFDFEEF PRRDKVTYMY YTGRLEVFNE NFPAADTKLS YALQNCNPKR ERNIRMILKY LVPVKLSLGI IPKDELLRNY NLHEYTKIVQ ALRKGDLRLL
301: RHALQEHEDR FLRSGVYLVL EKLELQVYQR LMKKIYINQK LSDPARAHQL KLEGIAKALR WLDMDMDLDE VECIMTILIY KNLVKGYLAH KSKVVVLSKQ
401: DPFPKLNGKP VSS

Arabidopsis Description

EER5Enhanced ethylene response protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.