CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70737
CDX84994
CDX84995
CDX87453
CDY03849
CDY13554
CDY13555
CDY24397
CDY24398
CDY24399
CDY31621
CDY35849
CDY35873
CDY36104
CDY42101
CDY51132
CDY66989
CDY67021
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16310.1	CDX70737	AT1G25490.1	21798944
AT5G16310.1	CDX84994	AT1G25490.1	21798944
AT5G16310.1	CDX84995	AT1G25490.1	21798944
AT5G16310.1	CDX87453	AT1G25490.1	21798944
AT5G16310.1	CDY03849	AT1G25490.1	21798944
AT5G16310.1	CDY24397	AT1G25490.1	21798944
AT5G16310.1	CDY24398	AT1G25490.1	21798944
AT5G16310.1	CDY24399	AT1G25490.1	21798944
AT5G16310.1	CDY31621	AT1G25490.1	21798944
AT5G16310.1	CDY35849	AT1G25490.1	21798944
AT5G16310.1	CDY36104	AT1G25490.1	21798944
AT5G16310.1	CDY42101	AT1G25490.1	21798944
AT5G16310.1	CDY51132	AT1G25490.1	21798944
AT5G16310.1	CDY70440	AT1G25490.1	21798944
AT5G16310.1	CDY13554	AT2G19560.1	19843313
AT5G16310.1	CDY13555	AT2G19560.1	19843313
AT5G16310.1	CDY35873	AT2G19560.1	19843313
AT5G16310.1	CDY66989	AT2G19560.1	19843313
AT5G16310.1	CDY67021	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78681	Canola	cytosol	97.26	94.96
AT5G16310.1	Thale cress	cytosol	85.11	83.83
KRH34213	Soybean	cytosol	69.91	68.86
KRG92573	Soybean	cytosol, nucleus	69.91	68.86
GSMUA_Achr3P00030_001	Banana	cytosol	64.44	68.17
PGSC0003DMT400052269	Potato	cytosol	67.48	66.47
Solyc09g018730.2.1	Tomato	cytosol, nucleus	63.22	66.03
VIT_04s0044g02040.t01	Wine grape	cytosol	66.26	65.27
GSMUA_AchrUn_...	Banana	cytosol	51.37	64.75
CDY39276	Canola	cytosol	62.01	62.01
CDY07458	Canola	cytosol	61.7	61.7
Os02t0180100-01	Rice	nucleus	60.79	60.79
TraesCS6D01G137100.1	Wheat	cytosol	60.49	60.67
TraesCS6B01G176100.1	Wheat	cytosol	60.49	60.67
EES14068	Sorghum	cytosol	60.79	60.42
TraesCS6A01G147800.1	Wheat	cytosol	60.18	60.37
EER95226	Sorghum	cytosol	60.18	59.82
HORVU6Hr1G029150.7	Barley	cytosol	59.27	59.27
Zm00001d049911_P001	Maize	cytosol	53.8	56.73
Zm00001d031894_P005	Maize	cytosol	59.27	54.93
CDY54444	Canola	cytosol, plastid, vacuole	7.6	53.19
HORVU6Hr1G083540.21	Barley	plastid	38.6	40.58
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	29.48	30.79

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	GO:A0A078C1A4
EnsemblPlants:CDX70685	ProteinID:CDX70685	ProteinID:CDX70685.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004843	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00140548001	InterPro:IPR036959	PFAM:PF01088	PIRSF:PIRSF038120	PRINTS:PR00707
PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf	SUPFAM:SSF54001
UniParc:UPI0004EDC9C6	InterPro:Ubiquitinyl_hydrolase_UCH37	SEG:seg	:	:	:

Description

BnaC03g07690D

Coordinates

chrLK031791:-:1541370..1542927

Molecular Weight (calculated)

38070.6 Da

IEP (calculated)

4.958

GRAVY (calculated)

-0.498

Length

329 amino acids

Sequence
(BLAST)

001: MSWLPVESDP GVFTEIIQQM QVKGVQVEEL YSLDITSLDE IRPVCGLVLL YKWRPEEKES RVVITEPNPN FFFASQIINN ACATQALLSV LMNSSGIEIG
101: SELTELKEFA KDFPPELKGL AISNNEAIRA AHNTFARPDS SSTTTDEDEL SARRKKREEE DDDVYHYISY LPVDGILYEL DGLKEGPISL GQCLGEPDGI
201: EWLRMVQPVV QERIDQYLQN EIRFSLLAVV KNRKEMYRAE LKEYQMKRER ILQQYAEKSS YEALDKSLSE VNVGIETVSQ KIVMEEERAK NWKKENLRRK
301: HNYVPFLFNF LKILADKKKL KPLIEKARR

Best Arabidopsis Sequence Match ( AT5G16310.1 )
(BLAST)

001: MSWLPVESDP GIFTEIIQQM QVKGVQVEEL YSLDFNSLDE IRPVYGLILL YKWRPEEKEN RVVITEPNPN FFFASQIINN ACATQAILSV LMNSSSIDIG
101: SELSELKQFA KEFPPELKGL AINNNEAIRA AHNTFARPDP SSIMEDEELA AAKNLDEDDD VYHYISYLPV DGILYELDGL KEGPISLGQC LGEPEGIEWL
201: RMVQPVVQEQ IDRYSQNEIR FSLLAVVKNR KEMYVAELKE YQRKRERVLQ QLGALQADKY AEKSSYEALD RELSEVNIGI ETVSQKIVME EEKSKNWKKE
301: NMRRKHNYVP FLFNFLKILA DKKKLKPLIA KHHP

Arabidopsis Description

UCH1Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.