Factsheet for Solyc09g018730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc06g073150.2.1
Solyc07g039210.2.1
Solyc11g017300.1.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT1G65650.1	Solyc11g018610.1.1	AT1G35670.1	19130088
AT5G16310.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT5G16310.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT5G16310.1	Solyc07g039210.2.1	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052269	Potato	cytosol	99.05	93.41
KRH34213	Soybean	cytosol	88.89	83.83
KRG92573	Soybean	cytosol, nucleus	88.89	83.83
VIT_04s0044g02040.t01	Wine grape	cytosol	88.25	83.23
GSMUA_Achr3P00030_001	Banana	cytosol	80.95	81.99
GSMUA_AchrUn_...	Banana	cytosol	62.86	75.86
AT1G65650.1	Thale cress	cytosol	79.05	75.45
Bra004123.1-P	Field mustard	cytosol	78.41	75.08
CDY07458	Canola	cytosol	78.41	75.08
CDY39276	Canola	cytosol	78.41	75.08
Os02t0180100-01	Rice	nucleus	68.57	65.65
AT5G16310.1	Thale cress	cytosol	67.94	64.07
Zm00001d049911_P001	Maize	cytosol	63.17	63.78
CDX70685	Canola	cytosol	66.03	63.22
EES14068	Sorghum	cytosol	66.35	63.14
CDX78681	Canola	cytosol	66.98	62.61
EER95226	Sorghum	cytosol	65.71	62.54
TraesCS6D01G137100.1	Wheat	cytosol	64.44	61.89
TraesCS6A01G147800.1	Wheat	cytosol	64.13	61.59
TraesCS6B01G176100.1	Wheat	cytosol	64.13	61.59
HORVU6Hr1G029150.7	Barley	cytosol	64.13	61.4
Zm00001d031894_P005	Maize	cytosol	63.81	56.62
HORVU6Hr1G083540.21	Barley	plastid	40.95	41.21
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	31.75	31.75

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	MEROPS:C12.A02
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR036959	UniProt:K4CSD5	PFAM:PF01088
PIRSF:PIRSF038120	PRINTS:PR00707	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH
InterPro:Peptidase_C12_UCH_sf	SUPFAM:SSF54001	EnsemblPlantsGene:Solyc09g018730.2	EnsemblPlants:Solyc09g018730.2.1	UniParc:UPI000276C303	InterPro:Ubiquitinyl_hydrolase_UCH37

Description

Ubiquitin carboxyl-terminal hydrolase 2 [Source:Projected from Arabidopsis thaliana (AT1G65650) UniProtKB/Swiss-Prot;Acc:O04482]

Coordinates

chr9:+:16834461..16838447

Molecular Weight (calculated)

36063.4 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.463

Length

315 amino acids

Sequence
(BLAST)

001: MQVKGVQVEE LYSLDLDELN SLRPVFGLIF LFKWRPGEKD DRLVIKDPNP NLFFASQVIN NACATQAILS ILLNSPDVDI GPELSALKEF TKNFPPELKG
101: LAINNSEAIR TAHNSFARPE PFVPEEQKAA GKDDDVYHFI SYIPVDGVLY ELDGLKEGPI SLGPCPGGQG DIEWLRMVQP VIQERIERYS QSEIRFNLMA
201: VVKNRKEVYT AELKELQKRR ERILQQLAAS QSERVVDSSQ VESLNKSLAE VNSGIEAVSD KILREEEKFK KWKTENIRRK HNYIPFLFNF LKILAEKKQL
301: RPLIEKAKQK TTNPR

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.