Factsheet for Bra004123.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	Bra034407.1-P	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07458	Canola	cytosol	100.0	100.0
AT1G65650.1	Thale cress	cytosol	87.23	86.97
GSMUA_Achr3P00030_001	Banana	cytosol	77.2	81.67
PGSC0003DMT400052269	Potato	cytosol	80.85	79.64
KRH34213	Soybean	cytosol	79.64	78.44
Solyc09g018730.2.1	Tomato	cytosol, nucleus	75.08	78.41
KRG92573	Soybean	cytosol, nucleus	79.03	77.84
VIT_04s0044g02040.t01	Wine grape	cytosol	78.12	76.95
GSMUA_AchrUn_...	Banana	cytosol	54.1	68.2
Os02t0180100-01	Rice	nucleus	66.57	66.57
EES14068	Sorghum	cytosol	62.92	62.54
TraesCS6D01G137100.1	Wheat	cytosol	62.31	62.5
TraesCS6A01G147800.1	Wheat	cytosol	62.01	62.2
TraesCS6B01G176100.1	Wheat	cytosol	62.01	62.2
EER95226	Sorghum	cytosol	62.31	61.93
HORVU6Hr1G029150.7	Barley	cytosol	60.18	60.18
Zm00001d049911_P001	Maize	cytosol	55.02	58.01
Zm00001d031894_P005	Maize	cytosol	61.4	56.9
HORVU6Hr1G083540.21	Barley	plastid	38.91	40.89
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	30.7	32.06

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	EnsemblPlantsGene:Bra004123
EnsemblPlants:Bra004123.1	EnsemblPlants:Bra004123.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006508	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008234	GO:GO:0009056	GO:GO:0009653	GO:GO:0009987	GO:GO:0010016	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR036959	UniProt:M4CIT9	PFAM:PF01088
PIRSF:PIRSF038120	PRINTS:PR00707	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH
InterPro:Peptidase_C12_UCH_sf	SUPFAM:SSF54001	UniParc:UPI0002541474	InterPro:Ubiquitinyl_hydrolase_UCH37	SEG:seg	:

Description

AT1G65650 (E=3e-160) UCH2 | UCH2; ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA07:-:16967479..16969450

Molecular Weight (calculated)

37436.0 Da

IEP (calculated)

4.971

GRAVY (calculated)

-0.342

Length

329 amino acids

Sequence
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDLDSLNN LKPVYGLIFL FKWQAGVKDD RPTIQDPVSN LFFANQVINN ACATQAILSI LLNSPQVDIG
101: PELSTLKEFT KNFPSDLKGL AINNSEAIRT AHNSFARPEP FVPEEQKTAT KDDDVYHFIS YVPVDGVLYE LDGLKEGPIS LGPCPGDQSG IEWLQLVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQKE QMLLELAGAE KSRAGELEVL IGEVRSGIEA VSDKIVMEEE KFMKWKTENV RRKHNYIPFL
301: FNFLKLLAEK KQLKPLIEKA KKQKTESST

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.