Factsheet for HORVU5Hr1G105430.16

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

peroxisome 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	endoplasmic reticulum, peroxisome, plasma membrane
MultiLoc:	peroxisome
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU1Hr1G008160.1
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G054660.1
HORVU3Hr1G113750.1
HORVU4Hr1G019530.1
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU5Hr1G032550.3
HORVU5Hr1G059930.4
HORVU6Hr1G023630.1
HORVU7Hr1G078010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	HORVU4Hr1G019530.1	AT1G35670.1	19130088
AT1G65650.1	HORVU5Hr1G032550.3	AT1G35670.1	19130088
AT5G16310.1	HORVU0Hr1G018470.1	AT1G71230.1	21798944
AT5G16310.1	HORVU0Hr1G025410.1	AT1G71230.1	21798944
AT5G16310.1	HORVU1Hr1G008160.1	AT1G71230.1	21798944
AT5G16310.1	HORVU2Hr1G056160.5	AT1G71230.1	21798944
AT5G16310.1	HORVU2Hr1G067660.1	AT1G71230.1	21798944
AT5G16310.1	HORVU2Hr1G112000.1	AT1G71230.1	21798944
AT5G16310.1	HORVU3Hr1G021300.1	AT1G71230.1	21798944
AT5G16310.1	HORVU3Hr1G054660.1	AT1G71230.1	21798944
AT5G16310.1	HORVU3Hr1G113750.1	AT1G71230.1	21798944
AT5G16310.1	HORVU4Hr1G047410.2	AT1G71230.1	21798944
AT5G16310.1	HORVU4Hr1G048730.1	AT1G71230.1	21798944
AT5G16310.1	HORVU6Hr1G023630.1	AT1G71230.1	21798944
AT5G16310.1	HORVU7Hr1G078010.1	AT1G71230.1	21798944
AT5G16310.1	HORVU5Hr1G059930.4	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G083540.21	Barley	plastid	46.67	46.96
HORVU6Hr1G029150.7	Barley	cytosol	46.67	44.68
TraesCS6D01G137100.1	Wheat	cytosol	46.03	44.21
TraesCS6B01G176100.1	Wheat	cytosol	46.03	44.21
TraesCS6A01G147800.1	Wheat	cytosol	45.71	43.9
Zm00001d049911_P001	Maize	cytosol	40.32	40.71
EES14068	Sorghum	cytosol	42.22	40.18
EER95226	Sorghum	cytosol	41.59	39.58
Os02t0180100-01	Rice	nucleus	40.63	38.91
Zm00001d031894_P005	Maize	cytosol	43.17	38.31
GSMUA_Achr3P00030_001	Banana	cytosol	32.38	32.8
KRG92573	Soybean	cytosol, nucleus	33.97	32.04
GSMUA_AchrUn_...	Banana	cytosol	26.35	31.8
Solyc09g018730.2.1	Tomato	cytosol, nucleus	31.75	31.75
KRH34213	Soybean	cytosol	33.33	31.44
PGSC0003DMT400052269	Potato	cytosol	33.02	31.14
CDY39276	Canola	cytosol	32.06	30.7
Bra004123.1-P	Field mustard	cytosol	32.06	30.7
CDY07458	Canola	cytosol	32.06	30.7
AT1G65650.1	Thale cress	cytosol	31.75	30.3
VIT_04s0044g02040.t01	Wine grape	cytosol	31.75	29.94
CDX70685	Canola	cytosol	30.79	29.48
CDX78681	Canola	cytosol	31.11	29.08
AT5G16310.1	Thale cress	cytosol	30.79	29.04
HORVU6Hr1G092480.4	Barley	cytosol	28.89	25.71

Protein Annotations

MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	UniProt:A0A287SL35	GO:GO:0003674
GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:HORVU5Hr1G105430	EnsemblPlants:HORVU5Hr1G105430.16	InterPro:IPR036959	PFAM:PF01088	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf	SUPFAM:SSF54001	UniParc:UPI000B481B3F	SEG:seg

Description

No Description!

Coordinates

chrchr5H:-:621608971..621614262

Molecular Weight (calculated)

34040.8 Da

IEP (calculated)

4.588

GRAVY (calculated)

0.006

Length

315 amino acids

Sequence
(BLAST)

001: MMFSCISIDV CVRAKAGPDG DSFESSAFSL IIFILLNLVN ESKNMNEYRV EFRASKPNIV SVTGFYLLRP PNHKPSPTQP SPALPPRPAG PPRPAAAGSA
101: AASLPTSPPP LLAVSPSLLP SMAAATSGLS RPSAAAGNND GDVGLQDPIQ ASLQICKVDE LYSLDLDALN DLQPIYGLIL LYKWRPPEKD ERPVIKDAVP
201: NVFFANQIIN SACATQAIVS VLLNSSGITL SEDLKKLKEF AKDMPPELKG LAIVNYESIR ITSNSFARSD DYSEEQKSKD DDVYHFISYV PVDGVLYVPV
301: DGVLYLPVDW LCACL

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.