Factsheet for HORVU6Hr1G092480.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G444700.1	Wheat	cytosol	86.16	89.97
TraesCS6A01G402500.1	Wheat	cytosol	85.88	89.41
Os02t0822200-01	Rice	cytosol	74.29	79.46
KXG31437	Sorghum	vacuole	71.19	69.04
Zm00001d018512_P001	Maize	cytosol	68.36	66.3
TraesCS6D01G386100.1	Wheat	cytosol	71.19	66.14
HORVU6Hr1G029150.7	Barley	cytosol	51.13	55.02
HORVU6Hr1G083540.21	Barley	plastid	33.9	38.34
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	25.71	28.89
CDY54444	Canola	cytosol, plastid, vacuole	1.69	12.77

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	UniProt:A0A287V7L8
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:HORVU6Hr1G092480	EnsemblPlants:HORVU6Hr1G092480.4	InterPro:IPR036959	PFAM:PF01088
PIRSF:PIRSF038120	PRINTS:PR00707	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH
InterPro:Peptidase_C12_UCH_sf	SUPFAM:SSF54001	UniParc:UPI000B472992	InterPro:Ubiquitinyl_hydrolase_UCH37	SEG:seg	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A287V7L8]

Coordinates

chrchr6H:+:577491283..577494830

Molecular Weight (calculated)

39393.9 Da

IEP (calculated)

5.354

GRAVY (calculated)

-0.339

Length

354 amino acids

Sequence
(BLAST)

001: ASLARCCAVG GSSEDVVVHD RVRPRCFHRV DSGDASKRCT GVEELYSLDV DSLSQLQPVY GLIFLFKWMP GGNDERPVVS DPNPNLFFAR QVITNACATQ
101: AILSILMNRP EIDIGPELSN LKEFTGAFAP DMKGLAINNS DSIRAAHNSF ARPEPFVSDE QKAATKDDEV YHFISYIPFE GVLYELDGLK EGPISLGQYL
201: GGPEDLGWLQ MVQPVIQERI ERYSQSEIRF NLMAIIKNRK DVYTAELKEL EKKREQILQE LSNEATAAAE KESLNGALAE VASAVASVGE KIVMEEEKFR
301: KWKTENVRRK HNYIPFLFNL LKALAEKKQL TPLVEKARQQ KAPAPATGAS ASTS

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.