Factsheet for HORVU6Hr1G029150.7

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU1Hr1G008160.1
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G054660.1
HORVU3Hr1G113750.1
HORVU4Hr1G019530.1
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU5Hr1G032550.3
HORVU5Hr1G059930.4
HORVU6Hr1G023630.1
HORVU7Hr1G078010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	HORVU4Hr1G019530.1	AT1G35670.1	19130088
AT1G65650.1	HORVU5Hr1G032550.3	AT1G35670.1	19130088
AT5G16310.1	HORVU0Hr1G018470.1	AT1G71230.1	21798944
AT5G16310.1	HORVU0Hr1G025410.1	AT1G71230.1	21798944
AT5G16310.1	HORVU1Hr1G008160.1	AT1G71230.1	21798944
AT5G16310.1	HORVU2Hr1G056160.5	AT1G71230.1	21798944
AT5G16310.1	HORVU2Hr1G067660.1	AT1G71230.1	21798944
AT5G16310.1	HORVU2Hr1G112000.1	AT1G71230.1	21798944
AT5G16310.1	HORVU3Hr1G021300.1	AT1G71230.1	21798944
AT5G16310.1	HORVU3Hr1G054660.1	AT1G71230.1	21798944
AT5G16310.1	HORVU3Hr1G113750.1	AT1G71230.1	21798944
AT5G16310.1	HORVU4Hr1G047410.2	AT1G71230.1	21798944
AT5G16310.1	HORVU4Hr1G048730.1	AT1G71230.1	21798944
AT5G16310.1	HORVU6Hr1G023630.1	AT1G71230.1	21798944
AT5G16310.1	HORVU7Hr1G078010.1	AT1G71230.1	21798944
AT5G16310.1	HORVU5Hr1G059930.4	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G137100.1	Wheat	cytosol	93.62	93.9
TraesCS6B01G176100.1	Wheat	cytosol	93.31	93.6
TraesCS6A01G147800.1	Wheat	cytosol	93.01	93.29
EES14068	Sorghum	cytosol	82.37	81.87
Os02t0180100-01	Rice	nucleus	81.76	81.76
EER95226	Sorghum	cytosol	80.55	80.06
Zm00001d049911_P001	Maize	cytosol	74.16	78.21
Zm00001d031894_P005	Maize	cytosol	80.55	74.65
GSMUA_AchrUn_...	Banana	cytosol	54.1	68.2
GSMUA_Achr3P00030_001	Banana	cytosol	64.13	67.85
Solyc09g018730.2.1	Tomato	cytosol, nucleus	61.4	64.13
KRG92573	Soybean	cytosol, nucleus	65.05	64.07
KRH34213	Soybean	cytosol	64.13	63.17
PGSC0003DMT400052269	Potato	cytosol	64.13	63.17
VIT_04s0044g02040.t01	Wine grape	cytosol	62.92	61.98
AT1G65650.1	Thale cress	cytosol	60.79	60.61
CDY39276	Canola	cytosol	60.18	60.18
CDY07458	Canola	cytosol	60.18	60.18
Bra004123.1-P	Field mustard	cytosol	60.18	60.18
HORVU6Hr1G083540.21	Barley	plastid	56.53	59.42
CDX70685	Canola	cytosol	59.27	59.27
CDX78681	Canola	cytosol	60.18	58.75
AT5G16310.1	Thale cress	cytosol	59.57	58.68
HORVU6Hr1G092480.4	Barley	cytosol	55.02	51.13
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	44.68	46.67

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	UniProt:A0A287TR32
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:HORVU6Hr1G029150	EnsemblPlants:HORVU6Hr1G029150.7	InterPro:IPR036959	PFAM:PF01088
PIRSF:PIRSF038120	PRINTS:PR00707	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH
InterPro:Peptidase_C12_UCH_sf	SUPFAM:SSF54001	UniParc:UPI000B483094	InterPro:Ubiquitinyl_hydrolase_UCH37	SEG:seg	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A287TR32]

Coordinates

chrchr6H:+:117904616..117907189

Molecular Weight (calculated)

37336.0 Da

IEP (calculated)

5.592

GRAVY (calculated)

-0.409

Length

329 amino acids

Sequence
(BLAST)

001: MSWAPIENDP GCFYGAVATV AVEGSPSVDE LYSLDLDALN DLQPIYGLIL LYKWRPPEKD ERPVIKDAVP NVFFANQIIN SACATQAIVS VLLNSSGITL
101: SEDLKKLKEF AKDMPPELKG LAIVNCESIR ITSNSFARSD DYSEEQKSKD DDVYHFISYV PVDGVLYELD GLKEGPISLG KCPGGIGEMG WLKMVQPVIQ
201: ERIDKFSQNE IRFSVMAITK NRKEIFIMEL KELQRKRENL LSQMGDPSAN RQRPSVERSL AEVAAQIEAV TEKIIMEEEK AKKWKTENIR RKHNYVPFLF
301: NFLKILEEKQ QLKPLIEKAK QNSHGRNPK

Best Arabidopsis Sequence Match ( AT5G16310.1 )
(BLAST)

001: MSWLPVESDP GIFTEIIQQM QVKGVQVEEL YSLDFNSLDE IRPVYGLILL YKWRPEEKEN RVVITEPNPN FFFASQIINN ACATQAILSV LMNSSSIDIG
101: SELSELKQFA KEFPPELKGL AINNNEAIRA AHNTFARPDP SSIMEDEELA AAKNLDEDDD VYHYISYLPV DGILYELDGL KEGPISLGQC LGEPEGIEWL
201: RMVQPVVQEQ IDRYSQNEIR FSLLAVVKNR KEMYVAELKE YQRKRERVLQ QLGALQADKY AEKSSYEALD RELSEVNIGI ETVSQKIVME EEKSKNWKKE
301: NMRRKHNYVP FLFNFLKILA DKKKLKPLIA KHHP

Arabidopsis Description

UCH1Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.