CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73342
CDY37101

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	CDX73342	AT1G35670.1	19130088
AT1G65650.1	CDY37101	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004123.1-P	Field mustard	cytosol	100.0	100.0
CDY39276	Canola	cytosol	99.09	99.09
AT1G65650.1	Thale cress	cytosol	87.23	86.97
GSMUA_Achr3P00030_001	Banana	cytosol	77.2	81.67
PGSC0003DMT400052269	Potato	cytosol	80.85	79.64
KRH34213	Soybean	cytosol	79.64	78.44
Solyc09g018730.2.1	Tomato	cytosol, nucleus	75.08	78.41
KRG92573	Soybean	cytosol, nucleus	79.03	77.84
VIT_04s0044g02040.t01	Wine grape	cytosol	78.12	76.95
GSMUA_AchrUn_...	Banana	cytosol	54.1	68.2
Os02t0180100-01	Rice	nucleus	66.57	66.57
EES14068	Sorghum	cytosol	62.92	62.54
TraesCS6D01G137100.1	Wheat	cytosol	62.31	62.5
TraesCS6A01G147800.1	Wheat	cytosol	62.01	62.2
TraesCS6B01G176100.1	Wheat	cytosol	62.01	62.2
EER95226	Sorghum	cytosol	62.31	61.93
CDX70685	Canola	cytosol	61.7	61.7
CDX78681	Canola	cytosol	62.31	60.83
HORVU6Hr1G029150.7	Barley	cytosol	60.18	60.18
CDY54444	Canola	cytosol, plastid, vacuole	8.51	59.57
Zm00001d049911_P001	Maize	cytosol	55.02	58.01
Zm00001d031894_P005	Maize	cytosol	61.4	56.9
HORVU6Hr1G083540.21	Barley	plastid	38.91	40.89
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	30.7	32.06

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	GO:A0A078F749
UniProt:A0A078F749	EnsemblPlants:CDY07458	ProteinID:CDY07458	ProteinID:CDY07458.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
EnsemblPlantsGene:GSBRNA2T00124456001	InterPro:IPR036959	PFAM:PF01088	PIRSF:PIRSF038120	PRINTS:PR00707	PANTHER:PTHR10589
PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf	SUPFAM:SSF54001	UniParc:UPI0002541474
InterPro:Ubiquitinyl_hydrolase_UCH37	SEG:seg	:	:	:	:

Description

BnaA07g25370DUbiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A078F749]

Coordinates

chrLK031978:-:821497..823764

Molecular Weight (calculated)

37436.0 Da

IEP (calculated)

4.971

GRAVY (calculated)

-0.342

Length

329 amino acids

Sequence
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDLDSLNN LKPVYGLIFL FKWQAGVKDD RPTIQDPVSN LFFANQVINN ACATQAILSI LLNSPQVDIG
101: PELSTLKEFT KNFPSDLKGL AINNSEAIRT AHNSFARPEP FVPEEQKTAT KDDDVYHFIS YVPVDGVLYE LDGLKEGPIS LGPCPGDQSG IEWLQLVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQKE QMLLELAGAE KSRAGELEVL IGEVRSGIEA VSDKIVMEEE KFMKWKTENV RRKHNYIPFL
301: FNFLKLLAEK KQLKPLIEKA KKQKTESST

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.