CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98853
EES09373
EES16732
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	EES09373	AT1G35670.1	19130088
AT1G65650.1	EES16732	AT1G35670.1	19130088
AT5G16310.1	KXG27287	AT1G71230.1	21798944
AT5G16310.1	EER98853	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95226	Sorghum	cytosol	94.86	94.86
Zm00001d031894_P005	Maize	cytosol	92.45	86.2
Os02t0180100-01	Rice	nucleus	85.5	86.02
TraesCS6D01G137100.1	Wheat	cytosol	84.89	85.67
TraesCS6A01G147800.1	Wheat	cytosol	84.59	85.37
TraesCS6B01G176100.1	Wheat	cytosol	84.59	85.37
HORVU6Hr1G029150.7	Barley	cytosol	81.87	82.37
GSMUA_Achr3P00030_001	Banana	cytosol	67.37	71.7
GSMUA_AchrUn_...	Banana	cytosol	56.19	71.26
PGSC0003DMT400052269	Potato	cytosol	67.98	67.37
KRG92573	Soybean	cytosol, nucleus	67.98	67.37
KRH34213	Soybean	cytosol	67.37	66.77
Solyc09g018730.2.1	Tomato	cytosol, nucleus	63.14	66.35
VIT_04s0044g02040.t01	Wine grape	cytosol	65.86	65.27
AT1G65650.1	Thale cress	cytosol	63.14	63.33
CDY39276	Canola	cytosol	62.84	63.22
CDY07458	Canola	cytosol	62.54	62.92
Bra004123.1-P	Field mustard	cytosol	62.54	62.92
CDX70685	Canola	cytosol	60.42	60.79
AT5G16310.1	Thale cress	cytosol	60.73	60.18
CDX78681	Canola	cytosol	60.73	59.64
KXG31437	Sorghum	vacuole	63.44	57.53
HORVU6Hr1G083540.21	Barley	plastid	50.45	53.35
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	40.18	42.22

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	EntrezGene:8057798
UniProt:C5YMV1	ncoils:Coil	EnsemblPlants:EES14068	ProteinID:EES14068	ProteinID:EES14068.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR036959	PFAM:PF01088	PIRSF:PIRSF038120	PRINTS:PR00707	PANTHER:PTHR10589
PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf	EnsemblPlantsGene:SORBI_3007G165900	SUPFAM:SSF54001
UniParc:UPI0001A87BBB	InterPro:Ubiquitinyl_hydrolase_UCH37	RefSeq:XP_002444573.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:60107796..60112013

Molecular Weight (calculated)

37606.7 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.328

Length

331 amino acids

Sequence
(BLAST)

001: MSWAAIENDP GVFTELLQQM QLKGLQVDEL YSLDLDALSD LQPIYGLIVL YKWRPPEKDE RPVIKDAIPN LFFANQIINN ACATQAILSV LLNSPGITLS
101: DELKKLKEFA KDLPPELKGL AIVNCASIRM LNNSFARSEV SEEQKPHSKD DDVYHFISYV PVDGVLYELD GLKEGPISLG KCPGGIGDAG WLRLVQPVIK
201: EHIDMFSQNE IRFSVMAILK NRKEMFTVEL KDLQRKRESL LQQMGDPSAI RHVPSVEQSL AEVAAQIESV TEKIIMEEEK SKKWKTENLR RKHNYVPFLF
301: NFLKILEEKQ QLKPLIEKAK AKQKSHGPSA R

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.