CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95226
EER95747
EER97845
EES14068
OQU78144
OQU87820
OQU88310
OQU90370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19560.1	OQU78144	AT2G39340.1	19843313
AT2G19560.1	OQU87820	AT2G39340.1	19843313
AT2G19560.1	OQU90370	AT3G06290.1	19843313
AT2G19560.1	EER95226	AT5G16310.1	19843313
AT2G19560.1	EES14068	AT5G16310.1	19843313
AT2G19560.1	EER95747	AT5G61290.1	19843313
AT2G19560.1	EER97845	AT5G61290.1	19843313
AT2G19560.1	OQU88310	AT5G61290.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020359_P003	Maize	cytosol	96.58	92.29
Os09t0386400-01	Rice	cytosol	91.2	91.2
TraesCS5A01G201500.1	Wheat	cytosol	89.73	89.73
TraesCS5D01G207800.1	Wheat	cytosol	89.49	89.49
TraesCS5B01G200200.1	Wheat	cytosol	89.0	89.0
HORVU5Hr1G059930.4	Barley	cytosol	88.75	88.75
GSMUA_Achr7P18480_001	Banana	cytosol	72.86	72.16
VIT_11s0016g02290.t01	Wine grape	cytosol	70.17	69.49
KRH19149	Soybean	cytosol, nucleus	69.19	69.02
KRH02720	Soybean	cytosol, nucleus	69.19	68.52
CDY66989	Canola	cytosol	59.9	68.06
PGSC0003DMT400056705	Potato	cytosol	29.58	67.98
CDY67021	Canola	cytosol	59.66	67.97
PGSC0003DMT400034206	Potato	cytosol	67.97	66.99
Solyc07g039210.2.1	Tomato	nucleus	67.97	66.99
CDY35873	Canola	cytosol	66.99	66.34
Bra040682.1-P	Field mustard	cytosol	66.99	66.34
AT2G19560.1	Thale cress	cytosol	64.79	64.16
CDY13554	Canola	cytosol	25.67	60.69
CDY13555	Canola	cytosol, nucleus, vacuole	15.89	33.85

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.25.40.570	MapMan:16.11.2.2	EntrezGene:8056217	UniProt:C5XC20	EnsemblPlants:EER98853
ProteinID:EER98853	ProteinID:EER98853.1	GO:GO:0000973	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006139	GO:GO:0006368	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009719	GO:GO:0009723	GO:GO:0009873	GO:GO:0009987	GO:GO:0016043
GO:GO:0016973	GO:GO:0035327	GO:GO:0048364	GO:GO:0060968	GO:GO:0070390	GO:GO:0071033
InterPro:IPR000717	InterPro:IPR036388	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR12732
PANTHER:PTHR12732:SF0	EnsemblPlantsGene:SORBI_3002G192200	unigene:Sbi.18830	UniParc:UPI0001A83EEC	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002462332.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:57869550..57874083

Molecular Weight (calculated)

46511.8 Da

IEP (calculated)

9.742

GRAVY (calculated)

-0.068

Length

409 amino acids

Sequence
(BLAST)

001: MAAYLSMGEA HRRIGDYLSR VTNAISYSDG AALASLLSVS SAPASTPLSD ALAAFPDFPR LAGDRFPHLA DFLVPLLRAI HSHSVQRFAD AYSSFEKASS
101: AFLQEFRNWE TPWAMEAMHT VALEIRLIAE KADRELATNG KNPDKLQAAG SFLMKVFGTL AVKGPKRIGA LYVTCQLFKI YFRLGTVNLC RSVIRSIETA
201: RNFDFEDFPV KDKVTYMYYT GRLEVFNENF LVADQKLTYA LMHCNSQSES NLRRILKFLI PVKLSIGVLP KRTLLERYNL LEYADVVTAL KRGDLRLLRQ
301: ALDRHEDQFL KSGVYLVLEK LELQVYQRLV KKIHNIQRQK EPAKAHQIKL DVVVRALKWL EIDMDVDEVE CIMACLIYKN LIKGYFAHKS KVLVLSKQDP
401: FPKLNGKPV

Best Arabidopsis Sequence Match ( AT2G19560.1 )
(BLAST)

001: MAYVSMGEAH RRITEYLNRF CDAVSYQDSS TLCRLLSFSS NSPPLLSLAD ALNVFQDSSS LIRQSDRFSE YGEILAHVFR SLQSYRVGNL VEAYLAFDKF
101: ANAFVQEFRN WESAWALEAL YVVCYEIRVL AEKADKDLTS NGKSPEKLKA AGSLLMKVFG VLAGKGPKRV GALYVTCQLF KTYFKLGTVN LCRSVIRSIE
201: TARIFDFEEF PRRDKVTYMY YTGRLEVFNE NFPAADTKLS YALQNCNPKR ERNIRMILKY LVPVKLSLGI IPKDELLRNY NLHEYTKIVQ ALRKGDLRLL
301: RHALQEHEDR FLRSGVYLVL EKLELQVYQR LMKKIYINQK LSDPARAHQL KLEGIAKALR WLDMDMDLDE VECIMTILIY KNLVKGYLAH KSKVVVLSKQ
401: DPFPKLNGKP VSS

Arabidopsis Description

EER5Enhanced ethylene response protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.