Factsheet for PGSC0003DMT400034206

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400052269
PGSC0003DMT400062932
PGSC0003DMT400063125
PGSC0003DMT400069698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19560.1	PGSC0003DMT400052269	AT5G16310.1	19843313
AT2G19560.1	PGSC0003DMT400062932	AT5G45010.1	19843313
AT2G19560.1	PGSC0003DMT400069698	AT5G45010.1	19843313
AT2G19560.1	PGSC0003DMT400063125	AT5G61290.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g039210.2.1	Tomato	nucleus	96.87	96.87
PGSC0003DMT400056705	Potato	cytosol	39.76	92.7
VIT_11s0016g02290.t01	Wine grape	cytosol	81.2	81.6
KRH19149	Soybean	cytosol, nucleus	79.52	80.49
CDY67021	Canola	cytosol	68.92	79.67
KRH02720	Soybean	cytosol, nucleus	79.04	79.42
CDY66989	Canola	cytosol	68.67	79.17
Bra040682.1-P	Field mustard	cytosol	77.59	77.97
CDY35873	Canola	cytosol	77.59	77.97
AT2G19560.1	Thale cress	cytosol	75.42	75.79
GSMUA_Achr7P18480_001	Banana	cytosol	73.73	74.09
Os09t0386400-01	Rice	cytosol	67.95	68.95
EER98853	Sorghum	cytosol	66.99	67.97
CDY13554	Canola	cytosol	28.19	67.63
TraesCS5A01G201500.1	Wheat	cytosol	65.54	66.5
HORVU5Hr1G059930.4	Barley	cytosol	65.3	66.26
TraesCS5B01G200200.1	Wheat	cytosol	65.3	66.26
TraesCS5D01G207800.1	Wheat	cytosol	65.3	66.26
Zm00001d020359_P003	Maize	cytosol	66.99	64.95
CDY13555	Canola	cytosol, nucleus, vacuole	17.35	37.5

Protein Annotations

EnsemblPlants:PGSC0003DMT400034206	EnsemblPlantsGene:PGSC0003DMG400013151	EntrezGene:102594205	Gene3D:1.10.10.10	Gene3D:1.25.40.570	InterPro:IPR000717
InterPro:IPR036388	InterPro:PCI_dom	InterPro:WH-like_DNA-bd_sf	ncoils:Coil	PANTHER:PTHR12732	PANTHER:PTHR12732:SF0
PFAM:PF01399	PFscan:PS50250	PGSC:PGSC0003DMG400013151	RefSeq:XP_006346560.1	SEG:seg	UniParc:UPI000294C7E9
UniProt:M1B0A7	MapMan:16.11.2.2	:	:	:	:

Description

PCI domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013151]

Coordinates

chr7:+:34512148..34520159

Molecular Weight (calculated)

47906.4 Da

IEP (calculated)

9.797

GRAVY (calculated)

-0.126

Length

415 amino acids

Sequence
(BLAST)

001: MASAYLSMGE AHRRITDFLN RFSDAVSSQD AKSLCLIFSL SSNSSFLLSL SDALITFQDA SRVMRQADRY SQYADILLPL FRAIQSYRLK NLVESYQAFE
101: KAANAFTQEF RNWESAWALE ALYVIAYETR ILAERADREL ASNGKTPEKL KGAGSFLMKV FGVLAGKGSK RVGALYVTCQ LFKIYFKLGT VHLCKSVTRS
201: IETARIFDFE EFPLRDKVTY MYYTGRLEVY NENFSAADHK LSYALSHCNP RKERNIRMIL KYLIPVKLSI GILPKTSLLE KYNLTEYNNI VLALRRGDLR
301: LLRCALQEHE DQFLRSGVYL VLEKLELQVY QRLLKKIYII QKQKDQNKAH QIKLDLIVRA LKWLEIDMDI DEVECIMSIL IYKNFVKGYF AHKSKVVVLS
401: KQDPFPRLTG KAVNS

Best Arabidopsis Sequence Match ( AT2G19560.1 )
(BLAST)

001: MAYVSMGEAH RRITEYLNRF CDAVSYQDSS TLCRLLSFSS NSPPLLSLAD ALNVFQDSSS LIRQSDRFSE YGEILAHVFR SLQSYRVGNL VEAYLAFDKF
101: ANAFVQEFRN WESAWALEAL YVVCYEIRVL AEKADKDLTS NGKSPEKLKA AGSLLMKVFG VLAGKGPKRV GALYVTCQLF KTYFKLGTVN LCRSVIRSIE
201: TARIFDFEEF PRRDKVTYMY YTGRLEVFNE NFPAADTKLS YALQNCNPKR ERNIRMILKY LVPVKLSLGI IPKDELLRNY NLHEYTKIVQ ALRKGDLRLL
301: RHALQEHEDR FLRSGVYLVL EKLELQVYQR LMKKIYINQK LSDPARAHQL KLEGIAKALR WLDMDMDLDE VECIMTILIY KNLVKGYLAH KSKVVVLSKQ
401: DPFPKLNGKP VSS

Arabidopsis Description

EER5Enhanced ethylene response protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.