Factsheet for PGSC0003DMT400056705

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400052269
PGSC0003DMT400062932
PGSC0003DMT400063125
PGSC0003DMT400069698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19560.1	PGSC0003DMT400052269	AT5G16310.1	19843313
AT2G19560.1	PGSC0003DMT400062932	AT5G45010.1	19843313
AT2G19560.1	PGSC0003DMT400069698	AT5G45010.1	19843313
AT2G19560.1	PGSC0003DMT400063125	AT5G61290.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034206	Potato	cytosol	92.7	39.76
Solyc07g039210.2.1	Tomato	nucleus	91.57	39.28
CDY67021	Canola	cytosol	74.16	36.77
CDY66989	Canola	cytosol	73.6	36.39
KRH19149	Soybean	cytosol, nucleus	78.09	33.9
VIT_11s0016g02290.t01	Wine grape	cytosol	78.09	33.66
KRH02720	Soybean	cytosol, nucleus	77.53	33.41
Bra040682.1-P	Field mustard	cytosol	73.6	31.72
CDY35873	Canola	cytosol	73.6	31.72
CDY13554	Canola	cytosol	30.34	31.21
GSMUA_Achr7P18480_001	Banana	cytosol	71.91	30.99
AT2G19560.1	Thale cress	cytosol	71.91	30.99
EER98853	Sorghum	cytosol	67.98	29.58
Os09t0386400-01	Rice	cytosol	67.42	29.34
HORVU5Hr1G059930.4	Barley	cytosol	66.85	29.1
TraesCS5A01G201500.1	Wheat	cytosol	66.85	29.1
TraesCS5B01G200200.1	Wheat	cytosol	66.29	28.85
TraesCS5D01G207800.1	Wheat	cytosol	66.29	28.85
Zm00001d020359_P003	Maize	cytosol	67.98	28.27
CDY13555	Canola	cytosol, nucleus, vacuole	25.84	23.96

Protein Annotations

EnsemblPlants:PGSC0003DMT400056705	EnsemblPlantsGene:PGSC0003DMG400022053	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom	PANTHER:PTHR12732
PANTHER:PTHR12732:SF0	PFAM:PF01399	PGSC:PGSC0003DMG400022053	SEG:seg	UniParc:UPI00029564AE	UniProt:M1BZT6
MapMan:16.11.2.2	:	:	:	:	:

Description

PCI domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022053]

Coordinates

chr9:-:21429470..21430006

Molecular Weight (calculated)

21057.0 Da

IEP (calculated)

9.816

GRAVY (calculated)

-0.220

Length

178 amino acids

Sequence
(BLAST)

001: MLGTVHLCKS VTRSIEVSRI FDFEEFPLRD KVTYMYYTGR LEVYNENFSA ADHKLSYALS HCNPRKERNI RMILKYLITM KLSIGILPKT SLLEKYNLTE
101: YNNIVLALRR GDLQLLQCAL QEHEVQFLRS GIYLVLEKLE LQVYQRLLKK IYIIQKQKDQ NKAHQIKLDL IVRANQFG

Best Arabidopsis Sequence Match ( AT2G19560.1 )
(BLAST)

001: MAYVSMGEAH RRITEYLNRF CDAVSYQDSS TLCRLLSFSS NSPPLLSLAD ALNVFQDSSS LIRQSDRFSE YGEILAHVFR SLQSYRVGNL VEAYLAFDKF
101: ANAFVQEFRN WESAWALEAL YVVCYEIRVL AEKADKDLTS NGKSPEKLKA AGSLLMKVFG VLAGKGPKRV GALYVTCQLF KTYFKLGTVN LCRSVIRSIE
201: TARIFDFEEF PRRDKVTYMY YTGRLEVFNE NFPAADTKLS YALQNCNPKR ERNIRMILKY LVPVKLSLGI IPKDELLRNY NLHEYTKIVQ ALRKGDLRLL
301: RHALQEHEDR FLRSGVYLVL EKLELQVYQR LMKKIYINQK LSDPARAHQL KLEGIAKALR WLDMDMDLDE VECIMTILIY KNLVKGYLAH KSKVVVLSKQ
401: DPFPKLNGKP VSS

Arabidopsis Description

EER5Enhanced ethylene response protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.