Factsheet for VIT_11s0016g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0044g02040.t01
VIT_05s0020g02350.t01
VIT_13s0067g03680.t01
VIT_13s0067g03720.t01
VIT_14s0066g01530.t01
VIT_17s0000g06780.t01
VIT_17s0000g06790.t01
VIT_17s0000g08090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19560.1	VIT_13s0067g03680.t01	AT2G39340.1	19843313
AT2G19560.1	VIT_13s0067g03720.t01	AT2G39340.1	19843313
AT2G19560.1	VIT_05s0020g02350.t01	AT3G06290.1	19843313
AT2G19560.1	VIT_04s0044g02040.t01	AT5G16310.1	19843313
AT2G19560.1	VIT_14s0066g01530.t01	AT5G45010.1	19843313
AT2G19560.1	VIT_17s0000g08090.t01	AT5G45010.1	19843313
AT2G19560.1	VIT_17s0000g06780.t01	AT5G61290.1	19843313
AT2G19560.1	VIT_17s0000g06790.t01	AT5G61290.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19149	Soybean	cytosol, nucleus	84.5	85.12
KRH02720	Soybean	cytosol, nucleus	84.99	84.99
CDY35873	Canola	cytosol	81.36	81.36
CDY67021	Canola	cytosol	70.7	81.34
PGSC0003DMT400034206	Potato	cytosol	81.6	81.2
Bra040682.1-P	Field mustard	cytosol	81.11	81.11
CDY66989	Canola	cytosol	70.46	80.83
Solyc07g039210.2.1	Tomato	nucleus	81.11	80.72
AT2G19560.1	Thale cress	cytosol	80.39	80.39
GSMUA_Achr7P18480_001	Banana	cytosol	78.93	78.93
PGSC0003DMT400056705	Potato	cytosol	33.66	78.09
CDY13554	Canola	cytosol	30.51	72.83
Os09t0386400-01	Rice	cytosol	70.46	71.15
EER98853	Sorghum	cytosol	69.49	70.17
TraesCS5D01G207800.1	Wheat	cytosol	69.25	69.93
TraesCS5A01G201500.1	Wheat	cytosol	69.01	69.68
TraesCS5B01G200200.1	Wheat	cytosol	68.77	69.44
HORVU5Hr1G059930.4	Barley	cytosol	68.52	69.19
Zm00001d020359_P003	Maize	cytosol	69.01	66.59
CDY13555	Canola	cytosol, nucleus, vacuole	18.89	40.62

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.25.40.570	EntrezGene:100261071	wikigene:100261071	MapMan:16.11.2.2	ProteinID:CBI27920
ProteinID:CBI27920.3	UniProt:D7TB85	EMBL:FN595756	GO:GO:0000973	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006139	GO:GO:0006368
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016973	GO:GO:0035327	GO:GO:0070390	GO:GO:0071033	InterPro:IPR000717
InterPro:IPR036388	EntrezGene:LOC100261071	wikigene:LOC100261071	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250
PANTHER:PTHR12732	PANTHER:PTHR12732:SF0	UniParc:UPI00019841E2	ArrayExpress:VIT_11s0016g02290	EnsemblPlantsGene:VIT_11s0016g02290	EnsemblPlants:VIT_11s0016g02290.t01
unigene:Vvi.17773	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002282302	RefSeq:XP_002282302.1	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:1862470..1869755

Molecular Weight (calculated)

47735.5 Da

IEP (calculated)

9.845

GRAVY (calculated)

-0.109

Length

413 amino acids

Sequence
(BLAST)

001: MAYLSMGEAH RRITEYLNRF SDAVLTQDGS SLKQLLSISS NSPLLLSLAD ALNLFHDSNR LLKQSDRFSQ ISEIVSPLFR SIQNFRLGNL LDSYNAFEKA
101: ANAFIQEFRN WESAWALEAL YVIAYEIRVL AERADRELAS VGKTPEKLKG AGSFLMKVFG VLAGKGPKRV GALYVTCQLF KIYFKLGTVH LCRSVIRSIE
201: TARIFDFEEF PIRDKVTYMY YTGRLEVFNE NFPAADQKLS YALMHCNPHR EANIRMILKY LIPVKLSIGI LPKNWLLEKY NLIEYSNIVQ ALKRGDLRLL
301: RHALQEHEDR FLRSGVYLVL EKLELQVYQR LVKKIYFIQK QKDPSKAHQL KLEVIVKALK WLEMDMDVDE VECIMSILIY KNLMKGYFAH KSKVVVLSKQ
401: DPFPKLNGKP VNS

Best Arabidopsis Sequence Match ( AT2G19560.1 )
(BLAST)

001: MAYVSMGEAH RRITEYLNRF CDAVSYQDSS TLCRLLSFSS NSPPLLSLAD ALNVFQDSSS LIRQSDRFSE YGEILAHVFR SLQSYRVGNL VEAYLAFDKF
101: ANAFVQEFRN WESAWALEAL YVVCYEIRVL AEKADKDLTS NGKSPEKLKA AGSLLMKVFG VLAGKGPKRV GALYVTCQLF KTYFKLGTVN LCRSVIRSIE
201: TARIFDFEEF PRRDKVTYMY YTGRLEVFNE NFPAADTKLS YALQNCNPKR ERNIRMILKY LVPVKLSLGI IPKDELLRNY NLHEYTKIVQ ALRKGDLRLL
301: RHALQEHEDR FLRSGVYLVL EKLELQVYQR LMKKIYINQK LSDPARAHQL KLEGIAKALR WLDMDMDLDE VECIMTILIY KNLVKGYLAH KSKVVVLSKQ
401: DPFPKLNGKP VSS

Arabidopsis Description

EER5Enhanced ethylene response protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.