Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13554 | Canola | cytosol | 56.25 | 62.43 |
| PGSC0003DMT400056705 | Potato | cytosol | 23.96 | 25.84 |
| CDY35873 | Canola | cytosol | 47.92 | 22.28 |
| CDY67021 | Canola | cytosol | 40.1 | 21.45 |
| CDY66989 | Canola | cytosol | 39.58 | 21.11 |
| AT2G19560.1 | Thale cress | cytosol | 44.27 | 20.58 |
| VIT_11s0016g02290.t01 | Wine grape | cytosol | 40.62 | 18.89 |
| KRH19149 | Soybean | cytosol, nucleus | 39.58 | 18.54 |
| KRH02720 | Soybean | cytosol, nucleus | 39.06 | 18.16 |
| Solyc07g039210.2.1 | Tomato | nucleus | 39.06 | 18.07 |
| GSMUA_Achr7P18480_001 | Banana | cytosol | 37.5 | 17.43 |
| PGSC0003DMT400034206 | Potato | cytosol | 37.5 | 17.35 |
| Os09t0386400-01 | Rice | cytosol | 34.38 | 16.14 |
| EER98853 | Sorghum | cytosol | 33.85 | 15.89 |
| TraesCS5B01G200200.1 | Wheat | cytosol | 32.81 | 15.4 |
| TraesCS5D01G207800.1 | Wheat | cytosol | 32.81 | 15.4 |
| HORVU5Hr1G059930.4 | Barley | cytosol | 32.29 | 15.16 |
| TraesCS5A01G201500.1 | Wheat | cytosol | 32.29 | 15.16 |
| Zm00001d020359_P003 | Maize | cytosol | 33.33 | 14.95 |
Protein Annotations
| EnsemblPlants:CDY13555 | EnsemblPlantsGene:GSBRNA2T00077904001 | Gene3D:1.25.40.570 | PANTHER:PTHR12732 | PANTHER:PTHR12732:SF0 | ProteinID:CDY13555 |
| ProteinID:CDY13555.1 | UniParc:UPI0004EDE0B7 | UniProt:A0A078FGK6 | MapMan:35.1 | : | : |
Description
BnaC02g23660DBnaC02g23660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGK6]
Coordinates
chrLK032036:+:281876..283178
Molecular Weight (calculated)
22082.0 Da
IEP (calculated)
9.164
GRAVY (calculated)
-0.187
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGWRITEYL NRFCDAVSYE DSSMLCRLLS FSSRMILKYL IPVKLSLGIL PNDKLLPKYN LHEYMNVVQA PRKGDLRLRQ HSSSRTRRSC IVAVFTAQQW
101: LVSYRANRLN ESRDALITEQ LDINQVLEVR CLGKAGAPSL PGTHEENLSD PARGHQLKLE VIAMIAKALR WLEIDMDLDV MPVRINHGIE KV
101: LVSYRANRLN ESRDALITEQ LDINQVLEVR CLGKAGAPSL PGTHEENLSD PARGHQLKLE VIAMIAKALR WLEIDMDLDV MPVRINHGIE KV
001: MAYVSMGEAH RRITEYLNRF CDAVSYQDSS TLCRLLSFSS NSPPLLSLAD ALNVFQDSSS LIRQSDRFSE YGEILAHVFR SLQSYRVGNL VEAYLAFDKF
101: ANAFVQEFRN WESAWALEAL YVVCYEIRVL AEKADKDLTS NGKSPEKLKA AGSLLMKVFG VLAGKGPKRV GALYVTCQLF KTYFKLGTVN LCRSVIRSIE
201: TARIFDFEEF PRRDKVTYMY YTGRLEVFNE NFPAADTKLS YALQNCNPKR ERNIRMILKY LVPVKLSLGI IPKDELLRNY NLHEYTKIVQ ALRKGDLRLL
301: RHALQEHEDR FLRSGVYLVL EKLELQVYQR LMKKIYINQK LSDPARAHQL KLEGIAKALR WLDMDMDLDE VECIMTILIY KNLVKGYLAH KSKVVVLSKQ
401: DPFPKLNGKP VSS
101: ANAFVQEFRN WESAWALEAL YVVCYEIRVL AEKADKDLTS NGKSPEKLKA AGSLLMKVFG VLAGKGPKRV GALYVTCQLF KTYFKLGTVN LCRSVIRSIE
201: TARIFDFEEF PRRDKVTYMY YTGRLEVFNE NFPAADTKLS YALQNCNPKR ERNIRMILKY LVPVKLSLGI IPKDELLRNY NLHEYTKIVQ ALRKGDLRLL
301: RHALQEHEDR FLRSGVYLVL EKLELQVYQR LMKKIYINQK LSDPARAHQL KLEGIAKALR WLDMDMDLDE VECIMTILIY KNLVKGYLAH KSKVVVLSKQ
401: DPFPKLNGKP VSS
Arabidopsis Description
EER5Enhanced ethylene response protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.